Hg_chrom8_TN10mRNA_15969
Organism: Heterodera glycines Gene Locus: chr8:6603086-6605029 Feature type: polypeptideProtein Sequence
Length: 451
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 1.238 | 0.766 | 0.841 | 0.776 | 1.649 | 0.422 | 0.554 | 1.035 | 1.648 | 0.47 | 1.435 | 1.417 | 0.938 | 1.131 | 1.045 | 1.018 | 0.873 | 2.388 | 0.913 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
nucleus
|
KRYFAVRFVVADEVRNKRH
|
— | — | — | — |
1-22
|
0.984
|
0.998
|
4.000
|
4.000
|
0.122
|
0.071
|
0.020
|
0.156
|
0.310
|
0.289
|
0.236
|
0.016
|
0.727
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012187
|
1.000
|
1.000
|
Hsc_gene_6426.t1
|
Hsc_gene_6426.t1
|
— | — |
KAF7638191.1 ShKT domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
— |
IPR003582+41-76_41-77_42-76+|IPR006201+102-376+|IPR006202+85-226+|IPR036734+81-256_92-276+
|
SM00254+41-77+
|
PF01549+41-76+ShK_domain-like|PF02931+85-226+Neurotransmitter-gated_ion-channel_ligand_binding_domain
|
— |
PTHR18945+102-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-451
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
51384.030
|
6.899
|
1.500
|
18.625
|
12.417
|
43.902
|
56.098
|
9.756
|
8.869
|
48.559
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
326.445
|
103.550
|
40.538
|
22.440
|
759.565
|
2036.797
|
209.823
|
252.101
|
54.449
|
103.055
|
82.224
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.587
|
-2.343
|
-0.741
|
5.050
|
1.440
|
-3.268
|
-3.138
|
— | — | — | — | — | — |