Hg_chrom8_TN10mRNA_15971
Organism: Heterodera glycines Gene Locus: chr8:6606882-6609019 Feature type: polypeptideProtein Sequence
Length: 369
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.347 | 1.197 | 0.887 | 2.617 | 1.22 | 0.556 | 1.161 | 0.949 | 0.723 | 1.502 | 0.903 | 0.956 | 2.183 | 0.678 | 0.719 | 1.316 | 0.622 | 0.739 | 0.625 | 0.797 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15092
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.709
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-33
|
0.685
|
0.974
|
2.000
|
2.000
|
0.249
|
0.162
|
0.131
|
0.216
|
0.811
|
0.263
|
0.534
|
0.207
|
0.303
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001066
|
3.000
|
2.000
|
Hsc_gene_22057.t1;Hsc_gene_6430.t2
|
Hsc_gene_22057.t1;Hsc_gene_22057.t2;Hsc_gene_6430.t1;Hsc_gene_6430.t2
|
— |
Q19267.1 Protein disulfide isomerase crld-1 [Caenorhabditis elegans]
|
KAI1705360.1 calcium-binding EGF domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.944|GO:0110165_0.943|GO:0071944_0.757|GO:0008150_0.737|GO:0009987_0.621|GO:0016020_0.620|GO:0065007_0.572|GO:0005886_0.527|GO:0050789_0.522
|
IPR000152+276-287+|IPR000742+161-205_166-205_193-204_259-297_262-300+|IPR001881+259-300+|IPR002049+193-226+|IPR009030+153-300+|IPR018097+259-285+|IPR021852+109-152+|IPR049883+259-299+|IPR051146+149-230+
|
SM00179+259-300+|SM00181+161-205_262-300+
|
PF07645+259-299+Calcium-binding_EGF_domain|PF11938+109-152+TLR4_regulator_and_MIR-interacting_MSAP
|
— |
PTHR24038+149-230+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-369
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
40968.780
|
5.134
|
-6.500
|
23.577
|
13.279
|
43.902
|
56.098
|
11.382
|
12.195
|
51.762
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1694.658
|
534.606
|
1187.718
|
1294.224
|
1280.373
|
1043.493
|
1105.922
|
1055.422
|
3808.333
|
1744.718
|
2629.124
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
1.139
|
0.233
|
— |
-0.281
|
— | — | — | — | — | — | — | — |