SCN Proteipedia

Hg_chrom8_TN10mRNA_15974

Organism: Heterodera glycines Gene Locus: chr8:6615487-6619431 Feature type: polypeptide

Protein Sequence

Length: 684

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.935	0.816	1.09	0.504	0.999	1.312	0.818	1.462	0.487	1.502	0.598	0.946	1.34	1.434	1.611	1.023	0.815	1.041	0.45	0.43	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15094	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.481

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.489	0.186	0.008	0.633	0.143	0.109	0.088	0.015	0.145	0.074

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012190	1.000	1.000	Hsc_gene_6432.t1	Hsc_gene_6432.t1	—	Q17902.2 Egalitarian protein homolog [Caenorhabditis elegans]	KAF7638187.1 3'-5' exonuclease domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0006139\|GO:0008408	GO:0008150_0.952\|GO:0005575_0.913\|GO:0009987_0.902\|GO:0065007_0.891\|GO:0050789_0.873\|GO:0050794_0.865\|GO:0008152_0.793\|GO:0044238_0.789\|GO:0043170_0.785\|GO:0009058_0.775\|GO:0044237_0.773\|GO:0019222_0.759\|GO:0048519_0.759\|GO:0031323_0.757\|GO:0009059_0.752\|GO:0044249_0.752\|GO:0048523_0.750\|GO:0060255_0.750\|GO:0010467_0.746\|GO:0006139_0.733\|GO:0009889_0.732\|GO:0031326_0.732\|GO:0034654_0.729\|GO:0010556_0.728\|GO:0010468_0.727\|GO:0090304_0.726\|GO:0016070_0.720\|GO:0032774_0.720\|GO:0141187_0.720\|GO:0009892_0.705\|GO:0031324_0.700\|GO:0010605_0.699\|GO:0009890_0.692\|GO:0010558_0.692\|GO:0031327_0.692\|GO:0010629_0.681\|GO:0006396_0.678\|GO:0031047_0.673\|GO:0034587_0.670\|GO:0070918_0.670\|GO:0032991_0.639\|GO:0110165_0.635\|GO:0003674_0.546\|GO:0005622_0.543\|GO:1990923_0.540	IPR002562+325-524_398-504+\|IPR012337+321-513+\|IPR036397+295-538+\|IPR052144+22-512+	SM00474+325-524+	PF01612+398-504+3'-5'_exonuclease	—	PTHR46628+22-512+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	258-321;542-684	2.000	1-257;322-541	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.771	75803.910	7.409	9.000	26.754	9.795	47.515	52.485	14.766	11.988	52.339

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2991.573	7883.710	4927.648	1582.912	2218.864	3685.041	1957.933	5086.378	1055.289	2043.234	1619.829

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.908	-2.453	-1.529	0.455	0.747	-0.903	0.358	-1.234	—	—	—	—	—

No JSON data available for plots.

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