SCN Proteipedia

Hg_chrom8_TN10mRNA_15975

Organism: Heterodera glycines Gene Locus: chr8:6619482-6624589 Feature type: polypeptide

Protein Sequence

Length: 967

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.625	1.058	0.752	1.355	1.293	0.742	0.702	1.293	1.011	0.894	0.909	0.608	1.465	1.173	1.477	1.403	1.102	0.721	1.034	1.004	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15095	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RRRR,RRKKQFVYTNSRKANK,RRDISGSSTGGKRRFS,RKRKSIGGWLPIWERRKRI,KRKSIGGWLPIWERRKRIG	6-56	0.980	23-92	0.965	—	—	0.000	—	—	0.148	0.080	0.042	0.197	0.228	0.208	0.222	0.013	0.797	0.107

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004799	1.000	2.000	Hsc_gene_15404.t1;Hsc_gene_6433.t1	Hsc_gene_6433.t1;Hsc_gene_6434.t1;Hsc_gene_6434.t2	—	Q21974.1 Degenerin unc-8 [Caenorhabditis elegans]	KAI1714769.1 amiloride-sensitive sodium channel domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005272\|GO:0006811\|GO:0006814\|GO:0016020	GO:0008150_0.965\|GO:0005575_0.858\|GO:0110165_0.858\|GO:0009987_0.853\|GO:0016020_0.697\|GO:0003674_0.638\|GO:0051179_0.592\|GO:0006810_0.579\|GO:0051234_0.579\|GO:0071944_0.528\|GO:0055085_0.520\|GO:0006811_0.518\|GO:0034220_0.515\|GO:0050896_0.515\|GO:0006812_0.511	IPR001873+208-825_217-816_237-254_276-292_519-530_534-550_563-581_587-605_617-633_648-659_659-676_714-734_762-782_782-796_796-812+\|IPR004726+216-816+\|IPR020903+648-668+	—	PF00858+217-816+Amiloride-sensitive_sodium_channel	G3DSA:1.10.287.770:FF:000001+761-823+Acid-sensing_ion_channel_subunit_1	PTHR11690+208-825+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-149;922-967	1.000	150-921	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.872	109555.500	8.173	25.500	27.715	12.616	51.706	48.294	15.822	11.892	51.293

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	turquoise	130.455	110.307	467.507	143.516	48.060	17.273	66.115	129.439	6.043	197.879	115.663

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.855	0.243	-1.595	-1.608	-1.462	1.945	2.804	-0.829	-5.183	4.819	—	—	—

No JSON data available for plots.

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