SCN Proteipedia

Hg_chrom8_TN10mRNA_15985

Organism: Heterodera glycines Gene Locus: chr8:6655742-6656897 Feature type: polypeptide

Protein Sequence

Length: 161 (Signal peptide: 1-27)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.506	0.722	1.581	1.285	1.035	0.478	1.109	1.242	1.656	1.259	1.035	1.461	1.035	1.075	1.141	0.621	1.018	0.753	0.0	1.096	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15105	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	HSP11\|AF159590.1#tn8jg22490.t1	HSP11\|AF1595901#tn8jg22490t1	—	—	—	9-Migratory	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	extracellular	—	—	—	—	—	—	1-27	0.963	1.000	0.000	0.000	0.091	0.260	0.116	0.191	0.337	0.196	0.121	0.038	0.313	0.832

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003590	2.000	1.000	Hsc_gene_6441.t1	Hsc_gene_6441.t1	—	Q03575.1 Transthyretin-like protein 5 [Caenorhabditis elegans]	AVA09722.1 putative effector protein [Heterodera avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0009986	GO:0008150_0.932\|GO:0005575_0.876\|GO:0110165_0.868\|GO:0003674_0.863\|GO:0009987_0.850\|GO:0005488_0.791\|GO:0005515_0.760\|GO:0016020_0.754\|GO:0032502_0.748\|GO:0048856_0.748\|GO:0071840_0.727\|GO:0016043_0.719\|GO:0051179_0.710\|GO:0006810_0.707\|GO:0051234_0.707\|GO:0043226_0.705\|GO:0008219_0.691\|GO:0012501_0.690\|GO:0006915_0.686\|GO:0006996_0.686\|GO:0043227_0.685\|GO:0071705_0.685\|GO:0005102_0.684\|GO:0033036_0.684\|GO:0061024_0.683\|GO:0016192_0.681\|GO:0016050_0.678\|GO:0098657_0.676\|GO:0006900_0.675\|GO:0010876_0.675\|GO:0006897_0.674\|GO:0010324_0.674\|GO:0042802_0.674\|GO:0006869_0.670\|GO:0006909_0.670\|GO:0006910_0.670\|GO:0008037_0.670\|GO:0015748_0.670\|GO:0015914_0.670\|GO:0015917_0.670\|GO:0038024_0.670\|GO:0043277_0.670\|GO:0043654_0.670\|GO:0060090_0.670\|GO:1902742_0.670\|GO:0005576_0.660\|GO:0008289_0.659\|GO:0042803_0.659\|GO:0046983_0.659\|GO:0005543_0.655\|GO:0030674_0.654\|GO:0001786_0.650\|GO:0005124_0.650\|GO:0072341_0.650\|GO:0031982_0.588\|GO:0043230_0.569\|GO:0065010_0.569\|GO:1903561_0.569\|GO:0009986_0.562	IPR001534+17-160_49-127+\|IPR038479+41-155+	—	PF01060+49-127+Transthyretin-like_family	—	PTHR21700+17-160+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-161	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.526	17941.550	5.654	-2.000	29.814	9.938	45.342	54.658	14.907	14.907	50.311

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	purple	1766.765	904.202	2847.554	1322.352	610.045	713.695	522.592	10280.404	134.995	1178.032	731.016

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.428	0.411	-0.999	-1.149	0.242	-0.440	3.765	-4.165	-3.244	—	—	—	—

Properties

Window size Custom profile

Custom patterns

Back to Browser