Hg_chrom8_TN10mRNA_15988
Organism: Heterodera glycines Gene Locus: chr8:6663346-6665407 Feature type: polypeptideProtein Sequence
Length: 269
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.605 | 1.124 | 0.879 | 1.282 | 0.496 | 1.049 | 0.575 | 1.673 | 1.652 | 1.557 | 0.451 | 0.875 | 1.859 | 0.5 | 0.607 | 1.487 | 0.427 | 1.352 | 2.86 | 1.421 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15108
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.003
|
— | — |
0.058
|
0.112
|
0.017
|
0.178
|
0.707
|
0.499
|
0.600
|
0.002
|
0.250
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012195
|
1.000
|
1.000
|
Hsc_gene_6444.t1
|
Hsc_gene_6444.t1
|
— | — |
KAI3411886.1 Palmitoyltransferase zdhhc6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016409
|
GO:0008150_0.908|GO:0009987_0.840|GO:0005575_0.780|GO:0110165_0.780|GO:0016020_0.745|GO:0071944_0.700|GO:0005886_0.686|GO:0003674_0.652|GO:0005622_0.623|GO:0005737_0.611|GO:0008152_0.597|GO:0043226_0.588|GO:0043227_0.578|GO:0044237_0.575|GO:0043229_0.572|GO:0043231_0.572|GO:0005773_0.567|GO:0044238_0.549|GO:0009058_0.542|GO:0043170_0.528|GO:0044249_0.527|GO:0003824_0.523|GO:0019538_0.521|GO:0012505_0.520|GO:0009059_0.508|GO:0036211_0.502|GO:0043412_0.502
|
IPR001594+127-268+
|
— |
PF01529+127-268+DHHC_palmitoyltransferase
|
— |
PTHR12246+46-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-269
|
8hfc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
30850.630
|
6.390
|
-0.500
|
17.100
|
18.587
|
39.033
|
60.967
|
9.294
|
7.807
|
47.955
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkorange
|
557.366
|
384.613
|
368.468
|
358.940
|
447.667
|
479.963
|
724.795
|
626.885
|
72.558
|
1112.309
|
666.701
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.291
|
-0.237
|
— |
0.286
|
— |
0.603
|
0.281
|
0.350
|
-4.047
|
— | — | — | — |
No JSON data available for plots.