Hg_chrom8_TN10mRNA_15989
Organism: Heterodera glycines Gene Locus: chr8:6666200-6667529 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.81 | 0.729 | 0.507 | 1.201 | 0.348 | 0.536 | 0.456 | 1.045 | 1.626 | 1.742 | 0.422 | 1.23 | 2.613 | 0.804 | 1.351 | 0.896 | 1.599 | 0.95 | 1.876 | 1.025 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15109
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.882
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RPRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.048
|
0.071
|
0.016
|
0.070
|
0.792
|
0.292
|
0.501
|
0.002
|
0.539
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012196
|
1.000
|
1.000
|
Hsc_gene_6445.t1
|
Hsc_gene_6445.t1
|
— |
Q2HJ61.1 Phospholipid phosphatase 2 [Bos taurus]
|
KAI1716434.1 PAP2 superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006644
|
GO:0008150_0.854|GO:0005575_0.839|GO:0110165_0.839|GO:0016020_0.807|GO:0009987_0.780|GO:0071944_0.761|GO:0005886_0.751|GO:0003674_0.624
|
IPR000326+127-275_129-274+|IPR036938+38-274+|IPR043216+45-271+
|
SM00014+129-274+
|
PF01569+127-275+PAP2_superfamily
|
— |
PTHR10165+45-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
33013.030
|
9.578
|
16.000
|
16.376
|
17.422
|
37.631
|
62.369
|
11.498
|
4.878
|
46.690
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
1818.363
|
662.481
|
742.570
|
752.210
|
934.070
|
1257.139
|
1200.119
|
1811.100
|
902.275
|
4518.750
|
2968.832
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.127
|
0.281
|
0.443
|
— |
0.422
|
-0.453
|
-2.435
|
— | — | — | — |
No JSON data available for plots.