Hg_chrom8_TN10mRNA_15992
Organism: Heterodera glycines Gene Locus: chr8:6673829-6674640 Feature type: polypeptideProtein Sequence
Length: 147
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.633 | 0.949 | 0.742 | 1.173 | 0.454 | 0.523 | 1.053 | 1.361 | 0.907 | 1.379 | 0.722 | 1.2 | 1.323 | 1.308 | 0.833 | 1.069 | 1.004 | 1.958 | 1.57 | 0.4 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15112
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.746
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.414
|
— | — |
0.175
|
0.863
|
0.472
|
0.157
|
0.455
|
0.032
|
0.051
|
0.038
|
0.092
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012199
|
1.000
|
1.000
|
Hsc_gene_6448.t1
|
Hsc_gene_6448.t1
|
— |
Q96LU5.1 Mitochondrial inner membrane protease subunit 1 [Homo sapiens]
|
KAF7638173.1 Peptidase_S24 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006465|GO:0006627|GO:0008236|GO:0016020|GO:0042720
|
GO:0005575_0.832|GO:0110165_0.821|GO:0016020_0.736|GO:0005622_0.677|GO:0005737_0.677|GO:0043226_0.612|GO:0043227_0.604|GO:0043229_0.602|GO:0043231_0.602|GO:0003674_0.508|GO:0008150_0.507
|
IPR019533+14-94_28-131+|IPR019756+33-40+|IPR036286+25-144+|IPR037730+14-145+
|
— |
PF10502+14-94+Signal_peptidase,_peptidase_S26
|
— |
PTHR46041+14-145+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-147
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
15910.580
|
8.364
|
5.000
|
18.367
|
10.884
|
38.095
|
61.905
|
11.565
|
6.803
|
59.184
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
161.537
|
105.182
|
161.457
|
175.067
|
227.733
|
217.902
|
362.735
|
249.983
|
108.328
|
62.955
|
82.401
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.387
|
0.598
|
0.226
|
0.348
|
— |
0.745
|
— |
0.679
|
— | — | — | — | — |
No JSON data available for plots.