Hg_chrom8_TN10mRNA_15993
Organism: Heterodera glycines Gene Locus: chr8:6674957-6677547 Feature type: polypeptideProtein Sequence
Length: 381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 0.916 | 0.668 | 0.724 | 0.612 | 1.279 | 0.719 | 1.575 | 1.75 | 1.667 | 0.437 | 1.39 | 1.969 | 0.757 | 1.018 | 1.087 | 0.774 | 0.716 | 3.028 | 1.235 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15113
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.617
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — |
1-34
|
0.981
|
— | — |
0.000
|
— | — |
0.040
|
0.136
|
0.005
|
0.094
|
0.371
|
0.269
|
0.128
|
0.003
|
0.530
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012200
|
1.000
|
1.000
|
Hsc_gene_6449.t1
|
Hsc_gene_6449.t1
|
— |
Q9U3N4.1 Innexin-6 [Caenorhabditis elegans]
|
KAF7638172.1 Innexin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.841|GO:0110165_0.840|GO:0008150_0.838|GO:0009987_0.684|GO:0030054_0.551|GO:0016020_0.527|GO:0003674_0.524|GO:0005911_0.511|GO:0070161_0.511
|
IPR000990+11-362_19-368_25-360_47-58_75-84_104-126_239-248_263-279+
|
— |
PF00876+25-360+Innexin
|
— |
PTHR11893+11-362+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-381
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
44165.210
|
7.906
|
8.000
|
18.373
|
18.373
|
39.633
|
60.367
|
11.024
|
7.349
|
42.520
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
349.323
|
812.559
|
629.207
|
902.625
|
296.606
|
105.869
|
149.955
|
359.018
|
50.257
|
269.655
|
175.627
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.598
|
— |
0.629
|
-1.637
|
-1.472
|
0.511
|
1.657
|
-1.118
|
— |
4.375
|
— | — | — |
No JSON data available for plots.