Hg_chrom8_TN10mRNA_15994
Organism: Heterodera glycines Gene Locus: chr8:6678405-6679737 Feature type: polypeptideProtein Sequence
Length: 262
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.198 | 1.331 | 1.041 | 0.526 | 0.827 | 1.664 | 0.863 | 0.954 | 0.763 | 0.877 | 1.272 | 2.021 | 0.954 | 0.44 | 0.779 | 0.981 | 1.126 | 1.157 | 0.881 | 0.674 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15114
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KRKQQQKAEEPRKENK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.303
|
0.274
|
0.018
|
0.366
|
0.241
|
0.362
|
0.525
|
0.112
|
0.584
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012201
|
1.000
|
1.000
|
Hsc_gene_6451.t1
|
Hsc_gene_6451.t1;Hsc_gene_6451.t2
|
— |
Q5RFI2.1 Ras-related protein Rab-28 [Pongo abelii]
|
KAI1714757.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.880|GO:0110165_0.876|GO:0008150_0.754|GO:0005622_0.743|GO:0016020_0.729|GO:0043226_0.687|GO:0009987_0.671|GO:0043229_0.666|GO:0005737_0.646|GO:0043227_0.615|GO:0071944_0.588|GO:0005886_0.565|GO:0043231_0.523|GO:0051179_0.505|GO:0003674_0.504
|
IPR001806+14-262_21-185_22-188+|IPR005225+20-181+|IPR027417+14-252_18-185+
|
SM00173+17-188+|SM00174+22-188+|SM00175+20-188+
|
PF00071+21-185+Ras_family
|
G3DSA:3.40.50.300:FF:001447+16-189+Ras-related_protein_Rab-1B
|
PTHR47978+17-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;201-262
|
1.000
|
7-200
|
3e5h_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
28733.520
|
8.771
|
6.500
|
24.809
|
8.779
|
50.763
|
49.237
|
14.122
|
10.687
|
54.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
154.493
|
317.635
|
334.702
|
188.775
|
62.426
|
76.492
|
127.246
|
127.268
|
42.484
|
181.088
|
121.686
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.888
|
-0.717
|
-1.630
|
— |
0.744
|
0.628
|
— | — | — | — | — | — |
No JSON data available for plots.