Hg_chrom8_TN10mRNA_15995
Organism: Heterodera glycines Gene Locus: chr8:6681484-6687262 Feature type: polypeptideProtein Sequence
Length: 1,327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.517 | 1.437 | 0.795 | 0.598 | 1.746 | 2.183 | 0.556 | 1.356 | 0.653 | 0.906 | 1.153 | 1.286 | 1.13 | 1.261 | 1.0 | 1.346 | 1.038 | 0.708 | 0.348 | 0.31 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15115
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRRKAEKKEKKKQAK,KKEEKSEAQIAQEKERER,KKDGREKKEREEMMRKSEK,KKEREEMMRKSEKKRRKAE,RKSEKKRRKAEKKEKKKQA,KKEKKKQAKLEERMKKERE,HRKKSRKRKSHEEKPKPPEE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.962
|
0.049
|
0.008
|
0.279
|
0.045
|
0.013
|
0.019
|
0.008
|
0.043
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004802
|
1.000
|
2.000
|
Hsc_gene_6453.t1;Hsc_gene_6453.t2
|
Hsc_gene_6453.t1;Hsc_gene_6453.t2
|
— | — |
KAI3411880.1 Ras- protein Rab-28 [Globodera pallida]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR015671+651-740+
|
— |
PF15249+651-740+Conserved_region_of_unknown_function_on_GLTSCR_protein
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-641;769-1327
|
1.000
|
642-768
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
150224.650
|
5.922
|
-13.000
|
30.068
|
8.289
|
60.512
|
39.488
|
15.222
|
14.846
|
48.380
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1593.461
|
2730.291
|
1670.319
|
1168.724
|
1069.694
|
1248.679
|
1908.356
|
1095.773
|
2387.033
|
1096.678
|
1649.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.939
|
-1.361
|
-0.406
|
-0.159
|
0.238
|
0.623
|
— |
0.942
|
— | — | — | — | — |
No JSON data available for plots.