Hg_chrom8_TN10mRNA_15996
Organism: Heterodera glycines Gene Locus: chr8:6687645-6688603 Feature type: polypeptideProtein Sequence
Length: 147
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.712 | 0.791 | 1.237 | 0.938 | 0.567 | 1.221 | 0.567 | 1.02 | 1.663 | 1.287 | 0.722 | 1.2 | 1.134 | 2.093 | 1.111 | 0.875 | 1.004 | 0.515 | 1.57 | 1.2 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15116
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.513
|
0.170
|
0.003
|
0.548
|
0.187
|
0.083
|
0.289
|
0.093
|
0.248
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012202
|
1.000
|
1.000
|
Hsc_gene_6454.t1
|
Hsc_gene_6454.t1
|
M7.1
|
P35129.1 Ubiquitin-conjugating enzyme E2 2 [Caenorhabditis elegans]
|
KAI3411879.1 Ubiquitin-conjugating enzyme E2 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.887|GO:0003674_0.799|GO:0008152_0.721|GO:0043170_0.711|GO:0044238_0.710|GO:0003824_0.709|GO:0019538_0.693|GO:0140096_0.670|GO:0016740_0.665|GO:0016746_0.629|GO:0016755_0.628|GO:0019787_0.628|GO:0004842_0.623|GO:0005575_0.506
|
IPR000608+1-147_4-142_5-141+|IPR016135+1-147+|IPR023313+74-89+
|
SM00212+4-147+
|
PF00179+5-141+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000101+1-147+Ubiquitin-conjugating_enzyme_E2_D2
|
PTHR24068+5-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-147
|
1z2u_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
16678.180
|
7.187
|
1.500
|
22.449
|
12.245
|
42.857
|
57.143
|
12.245
|
10.204
|
50.340
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3962.297
|
2085.833
|
2412.850
|
3208.007
|
3957.827
|
3920.653
|
4461.911
|
4840.223
|
2612.547
|
6042.898
|
4572.748
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.484
|
0.519
|
0.271
|
— |
0.197
|
— | — |
-1.319
|
— | — | — | — |
No JSON data available for plots.