Hg_chrom8_TN10mRNA_15997
Organism: Heterodera glycines Gene Locus: chr8:6688942-6690446 Feature type: polypeptideProtein Sequence
Length: 171
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.496 | 1.276 | 0.807 | 1.754 | 0.45 | 0.278 | 0.585 | 0.91 | 1.66 | 1.418 | 0.688 | 0.975 | 0.787 | 1.074 | 1.337 | 0.767 | 0.975 | 0.45 | 0.688 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15117
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.815
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.944
|
0.166
|
0.031
|
0.115
|
0.026
|
0.026
|
0.045
|
0.027
|
0.025
|
0.254
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012203
|
1.000
|
1.000
|
Hsc_gene_6455.t1
|
Hsc_gene_6455.t1
|
— | — |
KAI3411878.1 DNA-binding protein c1d [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.931|GO:0008150_0.925|GO:0009987_0.874|GO:0003674_0.795|GO:0005488_0.795|GO:0008152_0.765|GO:0043170_0.765|GO:0044238_0.751|GO:0044237_0.744|GO:0009058_0.741|GO:0009059_0.741|GO:0044249_0.741|GO:0010467_0.739|GO:0006139_0.728|GO:0090304_0.720|GO:0034654_0.716|GO:0141187_0.715|GO:0016070_0.711|GO:0032774_0.711|GO:0032991_0.678|GO:0097159_0.677|GO:0003676_0.673|GO:0110165_0.663|GO:0005622_0.616|GO:0016020_0.568|GO:0043226_0.562|GO:0043229_0.555|GO:0043227_0.518|GO:0065007_0.517|GO:0050789_0.512
|
IPR011082+4-132+
|
— | — | — |
PTHR15341+4-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
169-171
|
1.000
|
1-168
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
19499.110
|
4.979
|
-4.000
|
33.333
|
7.602
|
55.556
|
44.444
|
15.789
|
17.544
|
47.953
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
619.079
|
427.844
|
364.142
|
550.740
|
636.453
|
601.175
|
461.391
|
522.874
|
320.411
|
1131.428
|
783.850
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.463
|
0.228
|
0.706
|
0.176
|
— |
-0.373
|
— | — | — | — | — | — | — |
No JSON data available for plots.