Hg_chrom8_TN10mRNA_15999
Organism: Heterodera glycines Gene Locus: chr8:6693845-6696283 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.049 | 0.57 | 1.285 | 0.817 | 1.357 | 0.7 | 1.176 | 0.915 | 1.351 | 0.832 | 1.499 | 1.634 | 1.207 | 2.241 | 1.092 | 0.836 | 0.594 | 1.056 | 0.115 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15119
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRRR,KRRWRRKRNAEERER
|
30-50
|
0.995
|
67-88
|
0.999
|
— | — |
0.000
|
— | — |
0.104
|
0.168
|
0.024
|
0.206
|
0.229
|
0.132
|
0.272
|
0.035
|
0.434
|
0.734
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012205
|
1.000
|
1.000
|
Hsc_gene_6457.t1
|
Hsc_gene_6457.t1
|
— |
Q9XSC1.1 Secreted frizzled-related protein 5 [Bos taurus]
|
KAI1714823.1 fz domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.949|GO:0009987_0.870|GO:0065007_0.848|GO:0050789_0.835|GO:0050794_0.780|GO:0005575_0.752|GO:0110165_0.752|GO:0032501_0.697|GO:0032502_0.656|GO:0048856_0.656|GO:0050896_0.650|GO:0051716_0.623|GO:0007275_0.610|GO:0007154_0.608|GO:0023052_0.606|GO:0007165_0.586|GO:0003674_0.580|GO:0048731_0.564|GO:0005488_0.519|GO:0048518_0.507|GO:0007166_0.501
|
IPR001134+354-491+|IPR008993+354-493+|IPR015526+190-404+|IPR020067+215-335_219-337_226-328+|IPR036790+207-334_218-333+
|
SM00063+219-337+
|
PF01392+226-328+Fz_domain
|
G3DSA:1.10.2000.10:FF:000001+214-338+secreted_frizzled-related_protein_2
|
PTHR11309+190-404+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;104-150
|
2.000
|
25-103;151-510
|
9epo_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
58182.390
|
11.122
|
49.000
|
26.863
|
10.000
|
49.412
|
50.588
|
18.824
|
8.039
|
46.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
438.848
|
202.835
|
605.148
|
513.752
|
249.383
|
203.290
|
174.711
|
838.761
|
257.391
|
681.460
|
499.716
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.349
|
1.204
|
— |
-1.074
|
-0.281
|
— |
1.942
|
-2.124
|
— | — | — | — | — |
No JSON data available for plots.