Hg_chrom8_TN10mRNA_16000
Organism: Heterodera glycines Gene Locus: chr8:6699557-6701501 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.423 | 0.387 | 1.101 | 0.621 | 0.887 | 0.507 | 1.197 | 1.596 | 1.689 | 0.443 | 2.816 | 1.773 | 0.665 | 0.977 | 1.026 | 0.785 | 1.37 | 1.432 | 1.33 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15120
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.060
|
0.054
|
0.020
|
0.099
|
0.377
|
0.256
|
0.162
|
0.011
|
0.858
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012206
|
1.000
|
1.000
|
Hsc_gene_6458.t1
|
Hsc_gene_6458.t1
|
— |
Q18321.2 G-protein coupled receptor daf-37 [Caenorhabditis elegans]
|
KAF7624785.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.963|GO:0009987_0.908|GO:0065007_0.830|GO:0050896_0.820|GO:0050789_0.807|GO:0051716_0.790|GO:0003674_0.785|GO:0005575_0.775|GO:0050794_0.775|GO:0110165_0.775|GO:0007154_0.769|GO:0023052_0.761|GO:0007165_0.748|GO:0071944_0.748|GO:0005886_0.742|GO:0016020_0.742|GO:0007186_0.732|GO:0060089_0.556|GO:0038023_0.551|GO:0004888_0.550|GO:0005488_0.512
|
IPR000276+54-78_74-340_87-108_138-160_231-254_285-309_322-348+|IPR017452+69-340+|IPR052954+49-361+
|
— |
PF00001+74-340+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR46641+49-361+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
43213.070
|
8.465
|
11.500
|
15.957
|
15.160
|
37.500
|
62.500
|
10.106
|
5.851
|
45.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
517.763
|
1687.877
|
1053.277
|
434.082
|
113.125
|
146.788
|
157.773
|
1914.288
|
248.478
|
13.649
|
114.290
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.910
|
-2.096
|
-1.170
|
-1.971
|
— | — |
3.611
|
-3.463
|
— | — | — | — | — |
No JSON data available for plots.