SCN Proteipedia

Hg_chrom8_TN10mRNA_16001

Organism: Heterodera glycines Gene Locus: chr8:6701652-6712946 Feature type: polypeptide

Protein Sequence

Length: 2,147

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.007	0.867	1.042	0.98	0.854	1.266	0.732	1.095	0.849	1.385	0.536	1.178	1.216	1.182	1.416	1.211	0.886	0.939	0.681	0.767	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15121	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.958

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRRS,QRRRPSARREKADKRGKMGEISTRERQKWKWRRTGR	49-140	0.942	38-59	0.983	—	—	0.000	—	—	0.166	0.037	0.005	0.240	0.242	0.520	0.434	0.020	0.794	0.113

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012207	1.000	1.000	Hsc_gene_6459.t1	Hsc_gene_6459.t1	—	P70206.1 Plexin-A1 [Mus musculus]	KAF7629263.1 Sema domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0017154\|GO:0071526	GO:0008150_0.881\|GO:0005575_0.848\|GO:0110165_0.843\|GO:0009987_0.794\|GO:0003674_0.735\|GO:0065007_0.700\|GO:0032502_0.695\|GO:0048856_0.695\|GO:0050789_0.689\|GO:0032501_0.682\|GO:0050794_0.665\|GO:0016020_0.643\|GO:0007275_0.627\|GO:0048731_0.611\|GO:0016043_0.589\|GO:0071840_0.589\|GO:0007399_0.564\|GO:0050896_0.556\|GO:0009653_0.530\|GO:0030154_0.526\|GO:0048869_0.526\|GO:0048468_0.520\|GO:0051716_0.513\|GO:0022008_0.503	IPR001627+140-639_170-623_462-614+\|IPR002165+642-694_817-849+\|IPR002909+1038-1133_1039-1132_1134-1219_1135-1218_1221-1319_1336-1420_1345-1393+\|IPR008936+1502-1698_1545-2077_1887-2115+\|IPR013548+1503-2080+\|IPR013783+652-819_829-987_1001-1134_1135-1226_1337-1416+\|IPR014756+1036-1134_1132-1220_1334-1404+\|IPR015943+156-640+\|IPR016201+641-694_817-852_986-1037+\|IPR031148+147-2105+\|IPR036352+169-639+\|IPR041362+884-985+\|IPR046800+1678-1789+	SM00423+641-694_817-852_986-1037+\|SM00429+1038-1133_1134-1219_1221-1319_1336-1420+\|SM00630+170-623+	PF01403+462-614+Sema_domain\|PF01437+642-694_817-849+Plexin_repeat\|PF01833+1039-1132_1135-1218_1345-1393+IPT/TIG_domain\|PF08337+1503-2080+Plexin_cytoplasmic_RasGAP_domain\|PF18020+884-985+TIG_domain_found_in_plexin\|PF20170+1678-1789+Plexin_cytoplasmic_RhoGTPase-binding_domain	G3DSA:2.60.40.10:FF:000203+1001-1135+Plexin_B2	PTHR22625+147-2105+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	51-103;1803-1852	3.000	1-50;104-1802;1853-2147	3ryt_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.744	237494.940	7.055	15.500	23.521	10.061	46.064	53.936	12.669	10.852	53.330

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	2014.262	6498.544	2610.431	2729.804	3120.666	2436.309	2293.723	1995.093	186.252	540.992	388.961

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.544	-1.389	0.172	0.161	-0.342	—	—	—	—	—	3.122	—	—

No JSON data available for plots.

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