Hg_chrom8_TN10mRNA_16002
Organism: Heterodera glycines Gene Locus: chr8:6720507-6722864 Feature type: polypeptideProtein Sequence
Length: 487
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.525 | 1.098 | 1.045 | 0.425 | 1.54 | 0.842 | 0.978 | 1.643 | 1.095 | 1.304 | 0.902 | 0.604 | 0.97 | 0.829 | 1.467 | 0.763 | 0.976 | 1.182 | 0.79 | 0.906 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15122
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.933
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.208
|
0.312
|
0.048
|
0.586
|
0.398
|
0.295
|
0.274
|
0.017
|
0.350
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012208
|
1.000
|
1.000
|
Hsc_gene_6460.t1
|
Hsc_gene_6460.t1
|
— |
P49193.2 Retinal-binding protein [Todarodes pacificus]
|
KAI3411873.1 S14 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.767|GO:0110165_0.757|GO:0008150_0.591|GO:0016020_0.587|GO:0005622_0.523|GO:0043226_0.516
|
IPR001251+131-300_131-303_137-297_137-298+|IPR036598+335-437+|IPR036865+60-328_137-305+|IPR051064+64-435+
|
SM00516+131-300+
|
PF00650+137-297+CRAL/TRIO_domain
|
— |
PTHR23324+64-435+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51;428-487
|
1.000
|
52-427
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
55141.240
|
6.410
|
-1.000
|
31.417
|
10.883
|
50.719
|
49.281
|
16.427
|
14.990
|
47.844
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
steelblue
|
3330.570
|
654.259
|
5250.774
|
3397.556
|
5031.449
|
7713.437
|
3586.989
|
7348.455
|
436.050
|
1875.612
|
1258.657
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.777
|
2.240
|
-0.521
|
0.534
|
0.632
|
-1.094
|
— |
-0.891
|
— | — | — | — | — |
No JSON data available for plots.