Hg_chrom8_TN10mRNA_16003
Organism: Heterodera glycines Gene Locus: chr8:6726624-6727081 Feature type: polypeptideProtein Sequence
Length: 82
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.425 | 0.284 | 0.665 | 3.364 | 0.813 | 0.625 | 1.452 | 3.659 | 0.271 | 0.824 | 1.109 | 0.717 | 1.016 | 1.407 | 1.244 | 0.523 | 1.0 | 0.924 | 0.938 | 1.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15123
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.270
|
0.004
|
0.654
|
0.101
|
0.306
|
0.190
|
0.030
|
0.215
|
0.336
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012209
|
1.000
|
1.000
|
Hsc_gene_6461.t1
|
Hsc_gene_6461.t1
|
— |
P50238.3 Cysteine-rich protein 1 [Homo sapiens]
|
KAI3411872.1 Cysteine-rich protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.798|GO:0005575_0.774|GO:0110165_0.767|GO:0009987_0.688|GO:0003674_0.625|GO:0005622_0.618|GO:0005488_0.588
|
IPR001781+2-64_3-57_4-60+
|
SM00132+3-57+
|
PF00412+4-60+LIM_domain
|
G3DSA:2.10.110.10:FF:000054+2-78+Cysteine-rich_protein_1
|
PTHR46074+1-77+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-82
|
1iml_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
9167.520
|
8.311
|
7.000
|
29.268
|
17.073
|
42.683
|
57.317
|
20.732
|
8.537
|
53.659
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
806.826
|
487.244
|
1069.386
|
654.220
|
857.290
|
813.426
|
383.473
|
1024.728
|
161.809
|
1424.846
|
883.544
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.906
|
0.288
|
-0.602
|
0.358
|
— |
-1.076
|
— |
-1.275
|
-3.212
|
— | — | — | — |
No JSON data available for plots.