Hg_chrom8_TN10mRNA_16004
Organism: Heterodera glycines Gene Locus: chr8:6727503-6731948 Feature type: polypeptideProtein Sequence
Length: 882
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.699 | 1.16 | 0.907 | 0.704 | 1.55 | 0.756 | 0.742 | 0.964 | 1.083 | 1.348 | 1.546 | 1.2 | 1.102 | 0.829 | 1.041 | 0.956 | 0.836 | 0.722 | 0.785 | 1.034 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15124
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KELRKPKRGKH,KRKNEISETETPTSKRMKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.834
|
0.109
|
0.004
|
0.323
|
0.097
|
0.021
|
0.030
|
0.006
|
0.086
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012210
|
1.000
|
1.000
|
Hsc_gene_6462.t1
|
Hsc_gene_6462.t1
|
— |
P31669.1 Poly [ADP-ribose] polymerase 1 [Xenopus laevis]
|
KAI3411871.1 Protein phosphatase methylesterase 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003950|GO:0008270
|
GO:0008150_0.926|GO:0009987_0.751|GO:0003674_0.749|GO:0005575_0.724|GO:0110165_0.717|GO:0008152_0.696|GO:0044238_0.686|GO:0005622_0.666|GO:0043170_0.662|GO:0050896_0.640|GO:0003824_0.624|GO:0043226_0.621|GO:0016020_0.614|GO:0043229_0.614|GO:0051716_0.610|GO:0016740_0.576|GO:0140096_0.571|GO:0006950_0.568|GO:0006139_0.564|GO:0043227_0.555|GO:0090304_0.547|GO:0065007_0.546|GO:0016757_0.540|GO:0033554_0.539|GO:0003950_0.534|GO:0016763_0.534|GO:0050789_0.534|GO:1990404_0.534|GO:0043231_0.523|GO:0006974_0.522
|
IPR001510+13-97_16-92_16-94_111-184_114-181+|IPR004102+528-652_529-668+|IPR008893+402-504_415-498_416-491+|IPR012317+662-882_682-875+|IPR012982+278-318+|IPR036616+524-671_528-672+|IPR036930+382-508+|IPR036957+4-107_108-194+|IPR038650+279-339+|IPR049296+216-276+|IPR050800+103-873+
|
SM00773+415-498+|SM01335+265-320+|SM01336+16-94_114-181+
|
PF00644+682-875+Poly(ADP-ribose)_polymerase_catalytic_domain|PF00645+16-92+Poly(ADP-ribose)_polymerase_and_DNA-Ligase_Zn-finger_region|PF02877+529-668+Poly(ADP-ribose)_polymerase,_regulatory_domain|PF05406+416-491+WGR_domain|PF08063+278-318+PADR1_domain,_zinc_ribbon_fold|PF21728+216-276+PADR1,_N-terminal_helical_domain
|
G3DSA:1.20.142.10:FF:000001+520-671+Poly_[ADP-ribose]_polymerase|G3DSA:3.90.228.10:FF:000002+672-879+Poly_[ADP-ribose]_polymerase
|
PTHR10459+103-873+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21;168-233
|
2.000
|
22-167;234-882
|
4dqy_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
100290.640
|
8.353
|
17.500
|
31.519
|
10.431
|
51.247
|
48.753
|
17.234
|
14.286
|
45.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
3939.740
|
11400.437
|
3121.350
|
2829.377
|
3026.896
|
2312.047
|
2788.317
|
2897.320
|
3703.382
|
3817.922
|
3768.833
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.099
|
-2.148
|
— | — |
-0.374
|
0.280
|
— | — | — | — | — | — | — |
No JSON data available for plots.