Hg_chrom8_TN10mRNA_16005
Organism: Heterodera glycines Gene Locus: chr8:6734196-6735926 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.738 | 0.962 | 0.182 | 1.411 | 0.95 | 1.134 | 1.587 | 1.058 | 1.073 | 0.882 | 1.245 | 1.176 | 0.305 | 1.62 | 0.68 | 0.52 | 1.443 | 2.035 | 0.622 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15125
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
4-25
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.140
|
0.810
|
0.069
|
0.294
|
0.397
|
0.096
|
0.104
|
0.213
|
0.054
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004803
|
1.000
|
2.000
|
Hsc_gene_6493.t1;Hsc_gene_6527.t1
|
Hsc_gene_1786.t1
|
— |
Q69CJ9.3 Large ribosomal subunit protein uL29 [Ophiophagus hannah]
|
KAI1718046.1 ribosomal l29 protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000276|GO:0000463|GO:0003735|GO:0005840|GO:0006412|GO:0015078|GO:0015986|GO:0022625
|
GO:0005575_0.807|GO:0110165_0.807|GO:0005622_0.752|GO:0005737_0.717|GO:0043226_0.706|GO:0043229_0.685|GO:0003674_0.606|GO:0016020_0.559|GO:0032991_0.525|GO:0043228_0.501|GO:0043232_0.501
|
IPR001854+108-138_110-138+|IPR006808+77-98+|IPR036049+104-154_108-139+|IPR045059+19-151+
|
— |
PF00831+108-138+Ribosomal_L29_protein|PF04718+77-98+Mitochondrial_ATP_synthase_g_subunit
|
— |
PTHR45722+19-151+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-189
|
8a3d_b
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
21269.200
|
7.474
|
3.000
|
30.688
|
12.169
|
45.503
|
54.497
|
16.931
|
13.757
|
47.090
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightcyan
|
937.717
|
519.490
|
1037.166
|
1033.454
|
993.661
|
1172.923
|
684.291
|
1164.259
|
932.965
|
925.822
|
928.884
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
0.855
|
— | — |
0.254
|
-0.767
|
— |
-0.623
|
— | — | — | — | — |
No JSON data available for plots.