Hg_chrom8_TN10mRNA_16006
Organism: Heterodera glycines Gene Locus: chr8:6738596-6739813 Feature type: polypeptideProtein Sequence
Length: 214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.576 | 0.652 | 0.595 | 0.483 | 0.0 | 0.479 | 0.89 | 0.701 | 1.038 | 1.768 | 0.354 | 1.924 | 2.077 | 0.719 | 0.858 | 1.402 | 0.996 | 1.062 | 2.876 | 0.825 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15126
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— | — |
26-46
|
0.843
|
— | — | — | — |
0.000
|
— | — |
0.080
|
0.558
|
0.189
|
0.118
|
0.530
|
0.242
|
0.582
|
0.073
|
0.045
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004765
|
2.000
|
1.000
|
Hsc_gene_6555.t1
|
— | — |
Q5XIA8.1 Growth hormone-inducible transmembrane protein [Rattus norvegicus]
|
KAI1728268.1 inhibitor of apoptosis-promoting bax1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.928|GO:0005575_0.891|GO:0110165_0.891|GO:0009987_0.849|GO:0016020_0.849|GO:0006810_0.783|GO:0051179_0.783|GO:0051234_0.783|GO:0055085_0.769|GO:0005622_0.752|GO:0005737_0.752|GO:0043226_0.715|GO:0043227_0.715|GO:0006811_0.711|GO:0034220_0.708|GO:0098660_0.708|GO:0043229_0.707|GO:0043231_0.707|GO:0098662_0.699|GO:0006812_0.696|GO:0071840_0.695|GO:0098655_0.694|GO:0016043_0.693|GO:0030001_0.691|GO:0061024_0.680|GO:0006996_0.679|GO:0006839_0.676|GO:0007005_0.674|GO:0005739_0.670|GO:0007006_0.670|GO:0007007_0.670|GO:1990542_0.670|GO:0003674_0.508
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-214
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
23211.220
|
9.945
|
8.500
|
11.215
|
15.421
|
31.776
|
68.224
|
7.944
|
3.271
|
55.140
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
584.249
|
986.544
|
1060.023
|
642.247
|
564.945
|
506.620
|
616.863
|
1007.559
|
138.408
|
432.981
|
306.736
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.126
|
-0.756
|
-0.614
|
-0.217
|
— |
0.295
|
0.885
|
-0.565
|
— | — | — | — | — |
No JSON data available for plots.