Hg_chrom8_TN10mRNA_16007
Organism: Heterodera glycines Gene Locus: chr8:6740059-6741411 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.596 | 1.126 | 1.243 | 0.491 | 1.757 | 1.826 | 0.543 | 0.427 | 0.823 | 1.232 | 0.993 | 1.173 | 1.187 | 0.548 | 1.802 | 1.302 | 0.701 | 0.734 | 0.877 | 0.587 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15127
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.591
|
0.161
|
0.036
|
0.508
|
0.054
|
0.064
|
0.157
|
0.049
|
0.029
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012211
|
1.000
|
1.000
|
Hsc_gene_6463.t1
|
Hsc_gene_6463.t1
|
— |
Q9N4E9.1 Serine/threonine-protein phosphatase 4 regulatory subunit ppfr-4 [Caenorhabditis elegans]
|
KAI1707393.1 TAP42-like family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009966
|
GO:0008150_0.788|GO:0009987_0.751|GO:0005575_0.676|GO:0110165_0.669|GO:0005622_0.631|GO:0003674_0.602|GO:0005488_0.599|GO:0065007_0.596|GO:0050789_0.573|GO:0005515_0.556|GO:0050794_0.555|GO:0050896_0.508
|
IPR007304+3-351_11-341+|IPR038511+9-238+
|
— |
PF04177+11-341+TAP42-like_family
|
— |
PTHR10933+3-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
282-351
|
1.000
|
1-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
40674.390
|
5.171
|
-5.500
|
33.618
|
8.262
|
58.974
|
41.026
|
16.239
|
17.379
|
43.875
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1313.093
|
1923.922
|
1544.633
|
853.359
|
859.893
|
812.990
|
1183.138
|
1186.585
|
1623.276
|
1390.629
|
1490.334
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.546
|
-1.310
|
-0.747
|
— | — |
0.553
|
0.440
|
— | — | — | — | — | — |
No JSON data available for plots.