Hg_chrom8_TN10mRNA_16008
Organism: Heterodera glycines Gene Locus: chr8:6741682-6743714 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.706 | 1.254 | 0.981 | 0.077 | 2.097 | 1.268 | 0.99 | 0.787 | 0.549 | 0.82 | 1.771 | 1.983 | 0.749 | 0.778 | 1.147 | 0.835 | 1.179 | 0.681 | 1.21 | 0.132 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15128
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKR,EKMKQRKEKKAEKAKEK,RRTGKWKKFKRDSRRHQK,RRHQKQKQSHPWKKPFKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.930
|
0.096
|
0.013
|
0.293
|
0.046
|
0.025
|
0.038
|
0.007
|
0.015
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004804
|
1.000
|
2.000
|
Hsc_gene_6464.t1;Hsc_gene_6464.t2
|
Hsc_gene_6464.t1
|
— | — |
KAF7629259.1 RNA_GG_bind domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.520
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006408
|
GO:0005575_0.927|GO:0110165_0.920|GO:0005622_0.722|GO:0008150_0.713|GO:0043226_0.681|GO:0009987_0.675|GO:0043229_0.668|GO:0016020_0.658|GO:0003674_0.653|GO:0005488_0.646|GO:0043227_0.607|GO:0043231_0.580|GO:0005737_0.578|GO:0005634_0.570
|
IPR019385+289-366+|IPR038092+280-379+|IPR039047+42-416+
|
— |
PF10258+289-366+Phosphorylated_adapter_RNA_export_protein,_RNA-binding_domain
|
— |
PTHR13135+42-416+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-265;313-445
|
1.000
|
266-312
|
9hfl_P
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
50124.950
|
6.641
|
0.500
|
36.854
|
6.292
|
60.225
|
39.775
|
18.876
|
17.978
|
46.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1264.216
|
947.711
|
921.307
|
970.522
|
1125.369
|
931.640
|
1171.817
|
689.235
|
1496.339
|
1874.593
|
1712.484
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.271
|
-0.103
|
0.184
|
0.182
|
-0.258
|
0.342
|
-0.538
|
0.908
|
— | — | — | — | — |
No JSON data available for plots.