Hg_chrom8_TN10mRNA_16012
Organism: Heterodera glycines Gene Locus: chr8:6748822-6752313 Feature type: polypeptideProtein Sequence
Length: 532
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.962 | 0.831 | 0.923 | 0.259 | 1.003 | 2.217 | 0.783 | 2.82 | 0.835 | 1.041 | 0.57 | 1.327 | 1.096 | 1.301 | 0.882 | 1.423 | 1.171 | 0.627 | 0.145 | 0.442 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15132
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRVHAYFADNTQLRQKVR,RRKIKNKLSAQESRRKRKE,RKIKNKLSAQESRRKRKEY
|
— | — |
3-28
|
0.970
|
— | — |
0.000
|
— | — |
0.815
|
0.126
|
0.012
|
0.334
|
0.095
|
0.077
|
0.089
|
0.005
|
0.114
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012214
|
1.000
|
1.000
|
Hsc_gene_6468.t1
|
Hsc_gene_6468.t1
|
— |
Q4JFH9.3 CREB homolog crh-2 [Caenorhabditis elegans]
|
KAF7629256.1 Nudix hydrolase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006355
|
GO:0008150_0.921|GO:0009987_0.890|GO:0065007_0.890|GO:0050789_0.876|GO:0050794_0.871|GO:0005575_0.846|GO:0110165_0.846|GO:0005622_0.809|GO:0008152_0.766|GO:0019222_0.766|GO:0031323_0.766|GO:0044237_0.766|GO:0043170_0.753|GO:0060255_0.753|GO:0003674_0.750|GO:0005488_0.750|GO:0009058_0.745|GO:0009059_0.745|GO:0010467_0.745|GO:0044249_0.745|GO:0009889_0.741|GO:0031326_0.740|GO:0010468_0.738|GO:0010556_0.738|GO:0048518_0.731|GO:0044238_0.714|GO:0080090_0.714|GO:0043226_0.710|GO:0043229_0.697|GO:0016020_0.686|GO:0006139_0.678|GO:0016070_0.678|GO:0032774_0.678|GO:0034654_0.678|GO:0090304_0.678|GO:0141187_0.678|GO:0097159_0.673|GO:0019219_0.666|GO:0003676_0.665|GO:0051252_0.662|GO:2001141_0.660|GO:0006351_0.659|GO:0006355_0.659|GO:0009893_0.639|GO:0048522_0.627|GO:0009891_0.623|GO:0003677_0.615|GO:0043565_0.615|GO:0043227_0.614|GO:0043231_0.599|GO:0010604_0.590|GO:0031325_0.589|GO:0005737_0.587|GO:0031328_0.577|GO:0003690_0.574|GO:1990837_0.574|GO:0006357_0.573|GO:0006366_0.573|GO:0010557_0.567|GO:0045935_0.560|GO:0051254_0.560|GO:0045893_0.546|GO:0050896_0.546|GO:1902680_0.546|GO:0005634_0.542|GO:0032502_0.527|GO:0000976_0.525|GO:0001067_0.525|GO:0043228_0.501
|
IPR004827+453-511_453-517_455-518_460-475+|IPR046347+457-515+
|
SM00338+453-517+
|
PF00170+453-511+bZIP_transcription_factor
|
— |
PTHR46004+85-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-144;303-532
|
1.000
|
145-302
|
6iak_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
58319.580
|
6.448
|
-1.000
|
24.812
|
11.278
|
54.135
|
45.865
|
13.722
|
11.090
|
52.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
969.436
|
468.304
|
524.721
|
269.677
|
134.926
|
800.770
|
324.452
|
377.853
|
4109.147
|
71.658
|
1802.011
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.933
|
-0.852
|
-1.031
|
2.584
|
-1.292
|
-1.181
|
— |
5.767
|
-3.759
|
— | — | — |
No JSON data available for plots.