Hg_chrom8_TN10mRNA_16015
Organism: Heterodera glycines Gene Locus: chr8:6757770-6758504 Feature type: polypeptideProtein Sequence
Length: 121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.345 | 0.902 | 1.425 | 0.826 | 1.06 | 0.59 | 2.066 | 1.102 | 1.452 | 1.377 | 2.917 | 2.066 | 0.477 | 0.675 | 0.945 | 0.406 | 1.252 | 0.0 | 0.243 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15135
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
16-39
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.732
|
0.237
|
0.160
|
0.373
|
0.081
|
0.062
|
0.042
|
0.008
|
0.207
|
0.473
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004771
|
2.000
|
1.000
|
Hsc_gene_6507.t1
|
— | — |
O75643.2 U5 small nuclear ribonucleoprotein 200 kDa helicase [Homo sapiens]
|
EJW77314.1 SNRNP200 protein [Wuchereria bancrofti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.863|GO:0110165_0.858|GO:0005622_0.805|GO:0008150_0.740|GO:0009987_0.691|GO:0043226_0.657|GO:0043229_0.652|GO:0016020_0.635|GO:0043227_0.592|GO:0008152_0.580|GO:0043231_0.577|GO:0044237_0.573|GO:0044238_0.567|GO:0009058_0.566|GO:0043170_0.565|GO:0009059_0.553|GO:0044249_0.553|GO:0010467_0.546|GO:0005737_0.502
|
IPR027417+1-54+|IPR036388+85-118+|IPR050474+43-117+
|
— | — | — |
PTHR47961+43-117+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-121
|
8alz_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
13706.110
|
8.369
|
5.500
|
26.446
|
12.397
|
45.455
|
54.545
|
16.529
|
9.917
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
318.951
|
383.671
|
318.872
|
286.137
|
230.144
|
219.155
|
237.301
|
359.044
|
215.214
|
471.128
|
361.451
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.497
|
-0.560
|
— |
-0.347
|
— | — |
0.606
|
-0.454
|
— | — | — | — | — |
No JSON data available for plots.