Hg_chrom8_TN10mRNA_16016
Organism: Heterodera glycines Gene Locus: chr8:6758775-6762599 Feature type: polypeptideProtein Sequence
Length: 647
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.204 | 1.114 | 0.899 | 1.066 | 1.674 | 1.189 | 0.313 | 1.546 | 1.03 | 1.671 | 0.726 | 2.091 | 1.331 | 0.565 | 0.946 | 0.751 | 0.633 | 0.749 | 0.476 | 1.182 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15136
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.558
|
0.132
|
0.007
|
0.579
|
0.320
|
0.132
|
0.293
|
0.066
|
0.189
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012215
|
1.000
|
1.000
|
Hsc_gene_5522.t2
|
Hsc_gene_5522.t1;Hsc_gene_5522.t2;Hsc_gene_6289.t1;Hsc_gene_6290.t1;Hsc_gene_6290.t2
|
— |
A4IHR1.1 Intraflagellar transport protein 70A [Xenopus tropicalis]
|
KAI1715950.1 tetratricopeptide repeat protein 30A2 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.902|GO:0110165_0.729|GO:0008150_0.654|GO:0032991_0.643|GO:0016020_0.642|GO:0071944_0.607|GO:0043226_0.602|GO:0009987_0.597|GO:0005622_0.593|GO:0005886_0.593|GO:0030990_0.558|GO:0043227_0.555
|
IPR011990+13-124_17-208_131-268_398-531_448-554+|IPR019734+42-75_140-173_180-213+|IPR039941+3-646+
|
SM00028+42-75_140-173_180-213+
|
— | — |
PTHR20931+3-646+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-647
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.868
|
74191.890
|
4.736
|
-26.000
|
27.512
|
12.519
|
46.059
|
53.941
|
12.519
|
14.992
|
42.813
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
199.211
|
436.128
|
499.252
|
218.356
|
108.011
|
76.982
|
173.297
|
248.687
|
12.068
|
202.231
|
120.733
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.135
|
-1.085
|
-1.047
|
-0.474
|
1.180
|
1.585
|
-0.379
|
— | — | — | — | — |
No JSON data available for plots.