Hg_chrom8_TN10mRNA_16017
Organism: Heterodera glycines Gene Locus: chr8:6762742-6763952 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 1.197 | 0.936 | 1.521 | 1.961 | 0.943 | 0.263 | 0.368 | 1.471 | 1.59 | 1.448 | 1.298 | 1.021 | 0.141 | 2.251 | 0.42 | 1.205 | 0.334 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15137
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.497
|
0.238
|
0.027
|
0.444
|
0.063
|
0.059
|
0.098
|
0.428
|
0.068
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012216
|
1.000
|
1.000
|
Hsc_gene_5523.t1
|
Hsc_gene_5523.t1
|
— |
B5FX56.1 Protein MIX23 [Taeniopygia guttata]
|
KAH7717070.1 Caffeine-induced death protein 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005758
|
GO:0005575_0.936|GO:0110165_0.929|GO:0005622_0.890|GO:0043226_0.841|GO:0016020_0.840|GO:0043229_0.819|GO:0005737_0.791|GO:0043227_0.764|GO:0043231_0.733|GO:0005739_0.564
|
IPR019171+10-132+
|
— | — | — |
PTHR31905+10-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
15830.340
|
8.778
|
5.500
|
38.235
|
4.412
|
57.353
|
42.647
|
21.324
|
16.912
|
38.971
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
516.169
|
523.263
|
688.076
|
425.389
|
398.167
|
321.257
|
429.285
|
576.072
|
478.554
|
638.758
|
570.099
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.165
|
-0.436
|
-0.585
|
— |
-0.295
|
0.428
|
0.736
|
-0.281
|
— | — | — | — | — |
No JSON data available for plots.