Hg_chrom8_TN10mRNA_16019
Organism: Heterodera glycines Gene Locus: chr8:6765654-6770303 Feature type: polypeptideProtein Sequence
Length: 1,037
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.83 | 0.964 | 0.999 | 0.599 | 0.9 | 1.212 | 0.39 | 1.254 | 1.393 | 1.772 | 0.804 | 1.248 | 2.143 | 0.408 | 1.299 | 1.281 | 0.901 | 0.774 | 0.742 | 0.596 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15139
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
FKRR,KRRS,KKLETVVNIFRNRRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.316
|
0.194
|
0.008
|
0.709
|
0.210
|
0.370
|
0.174
|
0.043
|
0.177
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012217
|
1.000
|
1.000
|
Hsc_gene_5524.t1
|
Hsc_gene_5524.t1
|
— |
Q6DIP9.1 WASH complex subunit 5 [Xenopus tropicalis]
|
KAI1715956.1 hereditary spastic paraplegia protein strumpellin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0071203
|
GO:0008150_0.796|GO:0005575_0.774|GO:0110165_0.767|GO:0009987_0.750|GO:0016020_0.713|GO:0005622_0.692|GO:0065007_0.678|GO:0050789_0.665|GO:0043226_0.648|GO:0050794_0.639|GO:0005737_0.633|GO:0043229_0.622|GO:0043227_0.621|GO:0043231_0.599|GO:0005886_0.530|GO:0071944_0.530
|
IPR019393+25-1023_32-194_232-951+
|
— |
PF10266+32-194_232-951+Hereditary_spastic_paraplegia_protein_strumpellin
|
— |
PTHR15691+25-1023+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1037
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
118919.210
|
8.306
|
21.000
|
25.072
|
13.211
|
48.409
|
51.591
|
14.176
|
10.897
|
43.491
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1469.065
|
2521.402
|
1841.021
|
1490.651
|
1434.864
|
1436.708
|
1549.684
|
1512.497
|
1421.954
|
940.633
|
1146.913
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.683
|
-0.895
|
-0.196
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.