SCN Proteipedia

Hg_chrom8_TN10mRNA_16021

Organism: Heterodera glycines Gene Locus: chr8:6776031-6778846 Feature type: polypeptide

Protein Sequence

Length: 609

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.974	1.222	0.567	0.963	0.602	1.726	0.743	2.381	0.693	1.287	0.572	1.835	0.775	1.895	0.905	1.267	1.265	0.697	0.253	0.29	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15141	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKR,KRQMAEEMCETTGRKAMRK	—	—	16-46	0.998	—	—	0.000	—	—	0.759	0.058	0.018	0.296	0.029	0.037	0.033	0.015	0.041	0.079

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001429	1.000	4.000	Hsc_gene_5526.t1;Hsc_gene_5528.t1;Hsc_gene_5530.t1;Hsc_gene_5532.t1	—	—	—	KAH7714261.1 Zinc fingerC2H2 type family protein [Aphelenchus avenae]	No	0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.954\|GO:0005575_0.923\|GO:0110165_0.915\|GO:0065007_0.914\|GO:0009987_0.902\|GO:0050789_0.901\|GO:0050794_0.893\|GO:0003674_0.865\|GO:0005488_0.839\|GO:0016020_0.836\|GO:0032501_0.834\|GO:0032502_0.831\|GO:0048856_0.831\|GO:0050896_0.829\|GO:0005622_0.816\|GO:0048518_0.809\|GO:0051716_0.801\|GO:0008152_0.799\|GO:0019222_0.799\|GO:0007275_0.798\|GO:0031323_0.795\|GO:0043170_0.795\|GO:0044237_0.795\|GO:0048522_0.794\|GO:0005515_0.789\|GO:0048731_0.787\|GO:0009058_0.785\|GO:0044238_0.785\|GO:0060255_0.785\|GO:0048519_0.779\|GO:0080090_0.778\|GO:0023052_0.777\|GO:0007154_0.774\|GO:0030154_0.773\|GO:0048869_0.773\|GO:0009059_0.769\|GO:0010467_0.769\|GO:0044249_0.769\|GO:0009889_0.765\|GO:0048523_0.765\|GO:0010468_0.764\|GO:0010556_0.764\|GO:0031326_0.764\|GO:0007165_0.761\|GO:0043226_0.757\|GO:0009893_0.751\|GO:0043229_0.750\|GO:0048513_0.750\|GO:0048468_0.749\|GO:0006139_0.747\|GO:0090304_0.746\|GO:0034654_0.745\|GO:0141187_0.745\|GO:0010604_0.744\|GO:0031325_0.744\|GO:0016070_0.743\|GO:0032774_0.743\|GO:0019219_0.742\|GO:0009891_0.738\|GO:0031328_0.738\|GO:0051252_0.738\|GO:0043227_0.736\|GO:0010646_0.735\|GO:0048583_0.735\|GO:0006351_0.732\|GO:2001141_0.732\|GO:0006355_0.731\|GO:0051239_0.731\|GO:0023051_0.730\|GO:0009653_0.729\|GO:0010557_0.729\|GO:0042221_0.729\|GO:0006950_0.727\|GO:0009966_0.726\|GO:0007166_0.723\|GO:0050793_0.723\|GO:0006357_0.716\|GO:0006366_0.716\|GO:0043231_0.716\|GO:0009892_0.713\|GO:0097159_0.713\|GO:0031324_0.710\|GO:0045595_0.708\|GO:0003676_0.707\|GO:0010605_0.707\|GO:0048584_0.703\|GO:0009890_0.702\|GO:0010558_0.702\|GO:0031327_0.702\|GO:0009605_0.701\|GO:0009719_0.701\|GO:1901700_0.700\|GO:0002376_0.699\|GO:0044419_0.698\|GO:0045934_0.697\|GO:0048585_0.697\|GO:0051253_0.697\|GO:0009790_0.696\|GO:0070887_0.695\|GO:0009607_0.694\|GO:0045892_0.694\|GO:0051093_0.694\|GO:1902679_0.694\|GO:0009968_0.693\|GO:0010648_0.693\|GO:0023057_0.693\|GO:0010628_0.692\|GO:0043207_0.691\|GO:0051707_0.691\|GO:0072359_0.691\|GO:0030097_0.690\|GO:0007423_0.689\|GO:0042592_0.689\|GO:0071495_0.689\|GO:0080134_0.689\|GO:1901698_0.689\|GO:0000122_0.688\|GO:0002682_0.688\|GO:0003677_0.688\|GO:0003690_0.688\|GO:0006952_0.688\|GO:0007167_0.688\|GO:0043565_0.688\|GO:1990837_0.688\|GO:0009791_0.687\|GO:0007507_0.686\|GO:0045596_0.686\|GO:0001654_0.685\|GO:0009725_0.685\|GO:0009792_0.685\|GO:0048880_0.685\|GO:0098542_0.685\|GO:0150063_0.685\|GO:0006955_0.684\|GO:0048598_0.684\|GO:0140110_0.684\|GO:0000976_0.683\|GO:0001067_0.683\|GO:0002684_0.683\|GO:0031347_0.683\|GO:0048732_0.682\|GO:0048871_0.682\|GO:1901701_0.682\|GO:0031349_0.680\|GO:0032101_0.680\|GO:0032103_0.680\|GO:0050776_0.680\|GO:0050778_0.680\|GO:0140546_0.680\|GO:0002683_0.679\|GO:0002831_0.679\|GO:0002833_0.679\|GO:0009617_0.679\|GO:0007169_0.678\|GO:0001894_0.676\|GO:0002252_0.676\|GO:0002520_0.676\|GO:0032870_0.676\|GO:0060249_0.676\|GO:1901699_0.676\|GO:0002697_0.675\|GO:0042742_0.675\|GO:0043434_0.675\|GO:0002164_0.674\|GO:0003700_0.673\|GO:0001700_0.670\|GO:0002225_0.670\|GO:0002440_0.670\|GO:0002699_0.670\|GO:0002700_0.670\|GO:0002702_0.670\|GO:0002759_0.670\|GO:0002760_0.670\|GO:0002775_0.670\|GO:0002777_0.670\|GO:0002778_0.670\|GO:0002780_0.670\|GO:0002784_0.670\|GO:0002786_0.670\|GO:0002803_0.670\|GO:0002805_0.670\|GO:0002807_0.670\|GO:0002808_0.670\|GO:0002920_0.670\|GO:0002922_0.670\|GO:0006518_0.670\|GO:0006959_0.670\|GO:0006963_0.670\|GO:0007390_0.670\|GO:0008286_0.670\|GO:0019730_0.670\|GO:0019731_0.670\|GO:0022416_0.670\|GO:0032868_0.670\|GO:0032869_0.670\|GO:0035166_0.670\|GO:0035167_0.670\|GO:0035168_0.670\|GO:0035169_0.670\|GO:0035170_0.670\|GO:0042386_0.670\|GO:0042387_0.670\|GO:0042688_0.670\|GO:0043043_0.670\|GO:0045610_0.670\|GO:0045611_0.670\|GO:0046626_0.670\|GO:0046627_0.670\|GO:0046665_0.670\|GO:0048534_0.670\|GO:0048542_0.670\|GO:0048749_0.670\|GO:0061844_0.670\|GO:0071375_0.670\|GO:1900076_0.670\|GO:1900077_0.670\|GO:1900424_0.670\|GO:1900426_0.670\|GO:0008134_0.660\|GO:0140297_0.660\|GO:0005634_0.658\|GO:0061629_0.658\|GO:0001217_0.650	IPR013087+520-543_547-570+	SM00355+520-543_547-570+	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-105;160-366;568-609	2.000	106-159;367-567	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.939	65754.720	8.466	23.500	19.704	8.867	48.276	51.724	12.972	6.732	56.814

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	435.938	2071.671	277.779	228.856	321.796	514.187	950.257	349.168	17.898	126.163	79.764

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-3.130	-3.316	—	0.459	0.691	0.896	-0.661	1.586	—	—	—	—	—

No JSON data available for plots.

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