SCN Proteipedia

Hg_chrom8_TN10mRNA_16024

Organism: Heterodera glycines Gene Locus: chr8:6779033-6787188 Feature type: polypeptide

Protein Sequence

Length: 1,719

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.758	1.218	0.941	0.722	1.057	1.119	0.554	1.425	1.5	1.391	0.749	1.369	1.454	0.783	0.938	1.454	0.887	0.899	0.805	0.582	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15142	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|lysosome_vacuole	—	PQVKRKM,KRPKLNSSSVSLRQRKM	—	—	—	—	—	—	0.000	—	—	0.265	0.122	0.014	0.527	0.257	0.681	0.612	0.057	0.306	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000930	3.000	3.000	Hsc_gene_5533.t1;Hsc_gene_5533.t2;Hsc_gene_5533.t3	Hsc_gene_5533.t1;Hsc_gene_5533.t2;Hsc_gene_5533.t3	—	Q9Y6D5.3 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Homo sapiens]	KAF7638012.1 SEC7 domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005085\|GO:0032012	GO:0005575_0.901\|GO:0110165_0.897\|GO:0016020_0.824\|GO:0008150_0.820\|GO:0005622_0.785\|GO:0009987_0.764\|GO:0071944_0.734\|GO:0043226_0.725\|GO:0005886_0.719\|GO:0005737_0.705\|GO:0043229_0.699\|GO:0043227_0.669\|GO:0043231_0.650\|GO:0005773_0.536\|GO:0051179_0.529\|GO:0051234_0.515\|GO:0006810_0.511\|GO:0012505_0.509\|GO:0003674_0.505	IPR000904+556-746_560-748_563-748_564-748+\|IPR011989+941-1417+\|IPR015403+1073-1155+\|IPR016024+71-1644+\|IPR023394+637-754+\|IPR032629+17-191+\|IPR032691+311-467+\|IPR035999+560-750+\|IPR046455+1465-1682+	SM00222+560-748+	PF01369+564-748+Sec7_domain\|PF09324+1073-1155+Mon2/Sec7/BIG1-like,_HDS\|PF12783+311-467+Mon2/Sec7/BIG1-like,_HUS_domain\|PF16213+17-191+Mon2/Sec7/BIG1-like,_dimerisation_and_cyclophilin-binding_domain\|PF20252+1465-1682+BIG2_C-terminal_domain	G3DSA:1.10.1000.11:FF:000003+637-756+Brefeldin_A-inhibited_guanine_nucleotide-exchange_protein_1\|G3DSA:1.10.220.20:FF:000002+550-636+Brefeldin_A-inhibited_guanine_nucleotide-exchange_protein_1	PTHR10663+3-1599+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	225-301;1695-1719	2.000	1-224;302-1694	3ltl_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.632	192505.410	6.190	-9.500	23.909	11.111	49.098	50.902	12.391	11.518	49.273

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	tan	2281.029	3567.038	1508.681	1542.872	1911.658	2439.726	3146.915	1854.956	4241.943	808.604	2280.035

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.470	-1.346	0.140	0.278	0.366	0.377	-0.500	0.904	2.271	—	—	—	—

No JSON data available for plots.

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