Hg_chrom8_TN10mRNA_16025
Organism: Heterodera glycines Gene Locus: chr8:6789363-6793957 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 0.756 | 0.919 | 0.747 | 1.986 | 1.759 | 0.559 | 2.347 | 0.642 | 1.171 | 0.492 | 1.274 | 0.602 | 0.972 | 1.989 | 0.98 | 1.598 | 0.492 | 0.555 | 0.106 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15143
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RSAAGRHHHHNHKGGGERHGTTQQHRRRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.151
|
0.413
|
0.045
|
0.222
|
0.179
|
0.060
|
0.085
|
0.038
|
0.205
|
0.899
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004805
|
1.000
|
2.000
|
Hsc_gene_5534.t1;Hsc_gene_5534.t2
|
Hsc_gene_5534.t1;Hsc_gene_5534.t2
|
— | — |
KAI1715916.1 snurportin-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002172+193-241_197-242_216-240+|IPR023415+216-240+|IPR036055+204-242_213-244+
|
SM00192+197-242+
|
— | — |
PTHR21105+175-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-206;257-277
|
1.000
|
207-256
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
31607.940
|
5.901
|
-4.500
|
34.657
|
7.942
|
61.372
|
38.628
|
17.690
|
16.968
|
46.570
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1059.390
|
1095.247
|
2930.909
|
450.976
|
379.801
|
1007.491
|
477.017
|
2577.931
|
881.175
|
629.185
|
737.180
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.192
|
-1.417
|
-2.592
|
-0.280
|
1.422
|
-1.069
|
1.253
|
-2.292
|
— | — | — | — | — |
No JSON data available for plots.