Hg_chrom8_TN10mRNA_16026
Organism: Heterodera glycines Gene Locus: chr8:6794268-6799039 Feature type: polypeptideProtein Sequence
Length: 835
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 0.947 | 1.023 | 0.661 | 0.998 | 0.829 | 0.741 | 1.437 | 1.011 | 1.198 | 0.472 | 1.55 | 1.497 | 1.105 | 1.222 | 1.3 | 0.746 | 1.143 | 1.198 | 0.916 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15144
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.573
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.482
|
0.139
|
0.010
|
0.583
|
0.211
|
0.573
|
0.215
|
0.361
|
0.160
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012219
|
1.000
|
1.000
|
Hsc_gene_5535.t1
|
Hsc_gene_5535.t1
|
— |
A0A2R8QP51.1 Dipeptidyl peptidase 9 [Danio rerio]
|
KAI1715917.1 prolyl oligopeptidase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008236
|
GO:0008150_0.891|GO:0005575_0.758|GO:0110165_0.749|GO:0003674_0.720|GO:0009987_0.632|GO:0065007_0.590|GO:0050789_0.568|GO:0003824_0.529
|
IPR001375+614-816+|IPR002469+156-451+|IPR029058+564-816_565-817+|IPR050278+163-817+
|
— |
PF00326+614-816+Prolyl_oligopeptidase_family|PF00930+156-451+Dipeptidyl_peptidase_IV_(DPP_IV)_N-terminal_region
|
— |
PTHR11731+163-817+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
63-118;828-835
|
2.000
|
1-62;119-827
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
93176.700
|
5.846
|
-9.000
|
23.593
|
12.934
|
44.551
|
55.449
|
11.976
|
11.617
|
52.695
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
2325.366
|
2387.027
|
2478.185
|
2041.389
|
2201.475
|
2706.197
|
3697.566
|
3122.733
|
2106.934
|
1605.311
|
1820.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.176
|
-0.363
|
-0.171
|
— |
0.312
|
0.461
|
— |
0.387
|
— | — | — | — | — |
No JSON data available for plots.