Hg_chrom8_TN10mRNA_16028
Organism: Heterodera glycines Gene Locus: chr8:6800936-6803761 Feature type: polypeptideProtein Sequence
Length: 426
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.283 | 0.873 | 0.939 | 1.133 | 0.9 | 1.083 | 0.838 | 0.939 | 0.887 | 1.205 | 0.782 | 1.657 | 1.239 | 0.948 | 1.15 | 0.905 | 0.731 | 1.352 | 1.083 | 0.345 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15146
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
9-29
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.078
|
0.923
|
0.102
|
0.331
|
0.115
|
0.131
|
0.194
|
0.021
|
0.186
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012221
|
1.000
|
1.000
|
Hsc_gene_5537.t1
|
Hsc_gene_5537.t1
|
— |
Q4W4Z2.2 Reticulon-4-interacting protein 1, mitochondrial [Caenorhabditis elegans]
|
KAH7721949.1 Protein RAD-8 [Aphelenchus avenae]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005739|GO:0009055|GO:0016491|GO:0020037
|
GO:0008150_0.819|GO:0005575_0.719|GO:0110165_0.715|GO:0009987_0.619|GO:0005622_0.614|GO:0005737_0.579|GO:0016020_0.511
|
IPR009056+156-281+|IPR011032+41-242+|IPR013154+132-177+|IPR020843+50-414+|IPR036291+194-330+|IPR037397+43-415+|IPR050700+32-416+
|
SM00829+50-414+
|
PF08240+132-177+Alcohol_dehydrogenase_GroES-like_domain|PF13602+270-414+Zinc-binding_dehydrogenase
|
G3DSA:3.40.50.720:FF:000147+202-386+Reticulon-4-interacting_protein_1_homolog,_mitochondrial
|
PTHR11695+32-416+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-426
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
46419.490
|
7.489
|
5.000
|
23.239
|
8.920
|
42.019
|
57.981
|
12.676
|
10.563
|
54.930
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkgrey
|
819.667
|
716.303
|
458.093
|
580.347
|
934.522
|
671.706
|
923.984
|
559.043
|
431.351
|
1446.030
|
1011.168
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.875
|
-0.441
|
0.450
|
0.656
|
-0.462
|
0.470
|
-0.370
|
0.867
|
— | — | — | — | — |
No JSON data available for plots.