Hg_chrom8_TN10mRNA_16029
Organism: Heterodera glycines Gene Locus: chr8:6803857-6804964 Feature type: polypeptideProtein Sequence
Length: 204
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.513 | 0.798 | 0.802 | 1.014 | 0.899 | 1.885 | 1.167 | 2.206 | 1.089 | 0.662 | 0.668 | 0.865 | 1.77 | 0.943 | 0.7 | 1.891 | 0.402 | 1.263 | 1.131 | 0.577 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15147
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_5538
|
— |
2-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
78-98
|
0.989
|
1-19
|
0.978
|
0.992
|
0.000
|
0.000
|
0.272
|
0.350
|
0.069
|
0.279
|
0.472
|
0.377
|
0.172
|
0.098
|
0.431
|
0.736
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012222
|
1.000
|
1.000
|
Hsc_gene_5538.t1
|
Hsc_gene_5538.t1
|
— |
Q9DCT5.1 Stromal cell-derived factor 2 [Mus musculus]
|
KAI1708237.1 MIR domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.917|GO:0110165_0.914|GO:0016020_0.825|GO:0008150_0.786|GO:0009987_0.725|GO:0005622_0.722|GO:0071944_0.706|GO:0005886_0.685|GO:0043226_0.685|GO:0005737_0.666|GO:0043229_0.660|GO:0043227_0.650|GO:0043231_0.650|GO:0005773_0.512|GO:0012505_0.504
|
IPR016093+25-79_41-191_87-144_145-199+|IPR036300+23-200+
|
SM00472+25-79_87-144_145-199+
|
PF02815+41-191+MIR_domain
|
— |
PTHR46809+23-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-204
|
1t9f_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
22369.960
|
6.573
|
0.500
|
22.059
|
14.216
|
48.529
|
51.471
|
12.255
|
9.804
|
53.922
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
sienna3
|
2143.430
|
689.112
|
847.214
|
1472.063
|
1902.737
|
2642.852
|
1452.843
|
1104.476
|
4302.336
|
2359.018
|
3191.869
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.958
|
0.906
|
0.338
|
0.489
|
-0.853
|
-1.359
|
0.536
|
— | — | — | — | — |