Hg_chrom8_TN10mRNA_16030
Organism: Heterodera glycines Gene Locus: chr8:6805399-6810690 Feature type: polypeptideProtein Sequence
Length: 1,006
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 0.832 | 1.139 | 0.548 | 1.044 | 1.121 | 0.651 | 1.441 | 1.171 | 1.397 | 0.813 | 1.286 | 1.381 | 0.879 | 1.095 | 1.065 | 0.961 | 0.934 | 0.765 | 0.848 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15148
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.510
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.366
|
0.512
|
0.004
|
0.606
|
0.129
|
0.186
|
0.091
|
0.146
|
0.082
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002511
|
3.000
|
1.000
|
Hsc_gene_5539.t1
|
Hsc_gene_5539.t1
|
— |
P48053.2 Uncharacterized protein C05D11.1 [Caenorhabditis elegans]
|
KAI1712135.1 peptidase m16 inactive domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0005575_0.881|GO:0110165_0.875|GO:0005622_0.810|GO:0005737_0.750|GO:0008150_0.715|GO:0016020_0.672|GO:0043226_0.607|GO:0043229_0.588|GO:0009987_0.585|GO:0043227_0.565|GO:0043231_0.540
|
IPR007863+196-333+|IPR011249+24-232_254-506_799-990+|IPR011765+50-143+
|
— |
PF00675+50-143+Insulinase_(Peptidase_family_M16)|PF05193+196-333+Peptidase_M16_inactive_domain
|
G3DSA:3.30.830.10:FF:000015+5-236+Putative_zinc_metalloprotease|G3DSA:3.30.830.10:FF:000031+249-478+Putative_zinc_metalloprotease
|
PTHR43016+17-990+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1006
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
112812.500
|
6.315
|
-3.500
|
26.143
|
11.730
|
47.416
|
52.584
|
13.618
|
12.525
|
49.105
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
3595.620
|
3450.247
|
1914.292
|
3394.998
|
4041.677
|
6419.504
|
4026.490
|
2147.110
|
1368.280
|
5181.756
|
3547.409
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.079
|
-0.160
|
0.935
|
0.220
|
0.682
|
-0.662
|
-1.682
|
1.049
|
-2.024
|
1.481
|
— | — | — |
No JSON data available for plots.