Hg_chrom8_TN10mRNA_16033
Organism: Heterodera glycines Gene Locus: chr8:6824919-6829984 Feature type: polypeptideProtein Sequence
Length: 1,001
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 0.883 | 1.162 | 0.723 | 1.099 | 1.23 | 0.654 | 1.399 | 1.265 | 1.458 | 0.878 | 0.881 | 1.443 | 0.788 | 0.999 | 0.956 | 0.884 | 0.999 | 0.768 | 0.852 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15151
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.866
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.366
|
0.270
|
0.006
|
0.763
|
0.227
|
0.190
|
0.165
|
0.155
|
0.168
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002511
|
3.000
|
1.000
|
Hsc_gene_5539.t1
|
— | — |
P48053.2 Uncharacterized protein C05D11.1 [Caenorhabditis elegans]
|
KAF7633912.1 Peptidase_M16_C domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0005575_0.876|GO:0110165_0.869|GO:0005622_0.810|GO:0005737_0.752|GO:0008150_0.673|GO:0016020_0.657|GO:0009987_0.616|GO:0043226_0.587|GO:0043229_0.565|GO:0043227_0.537|GO:0043231_0.514
|
IPR007863+195-326+|IPR011249+37-230_252-504_793-984+|IPR011765+49-140+
|
— |
PF00675+49-140+Insulinase_(Peptidase_family_M16)|PF05193+195-326+Peptidase_M16_inactive_domain
|
G3DSA:3.30.830.10:FF:000015+9-235+Putative_zinc_metalloprotease
|
PTHR43016+14-984+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1001
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
112658.500
|
5.966
|
-9.000
|
26.474
|
11.888
|
47.153
|
52.847
|
13.487
|
12.987
|
48.052
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2752.120
|
5115.478
|
2113.484
|
2481.208
|
2760.698
|
2436.906
|
2757.659
|
2189.622
|
1522.330
|
3453.133
|
2625.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.505
|
-1.181
|
0.340
|
0.122
|
-0.165
|
0.190
|
-0.259
|
0.476
|
— | — | — | — | — |
No JSON data available for plots.