Hg_chrom8_TN10mRNA_16034
Organism: Heterodera glycines Gene Locus: chr8:6830212-6832325 Feature type: polypeptideProtein Sequence
Length: 383
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.123 | 1.214 | 0.997 | 0.54 | 1.175 | 1.406 | 0.559 | 0.783 | 1.044 | 1.447 | 0.989 | 2.15 | 0.798 | 0.653 | 0.853 | 1.044 | 0.942 | 1.029 | 0.201 | 0.922 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15152
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.809
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.510
|
0.084
|
0.012
|
0.524
|
0.143
|
0.368
|
0.327
|
0.018
|
0.039
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004806
|
2.000
|
1.000
|
Hsc_gene_5540.t1
|
Hsc_gene_5540.t1
|
— |
A8QCY3.1 Eukaryotic translation initiation factor 3 subunit H [Brugia malayi]
|
KAH7714270.1 Mov34/MPN/PAD-1 family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003743|GO:0005515|GO:0005737|GO:0005852|GO:0008233|GO:0008237
|
GO:0008150_0.900|GO:0009987_0.737|GO:0005575_0.660|GO:0110165_0.652|GO:0005622_0.599|GO:0065007_0.581|GO:0050789_0.561|GO:0050794_0.543|GO:0008152_0.518|GO:0044238_0.502|GO:0044237_0.501
|
IPR000555+19-143_21-176+|IPR027524+20-307+|IPR037518+22-177+|IPR045810+161-358+|IPR050242+13-298+
|
SM00232+21-176+
|
PF01398+19-143+JAB1/Mov34/MPN/PAD-1_ubiquitin_protease|PF19445+161-358+C-terminal_region_of_eIF3h
|
G3DSA:3.40.140.10:FF:000087+11-235+Eukaryotic_translation_initiation_factor_3_subunit_H
|
PTHR10410+13-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
364-383
|
1.000
|
1-363
|
3j8c_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
42474.530
|
5.500
|
-4.000
|
24.804
|
7.833
|
48.564
|
51.436
|
12.272
|
12.533
|
49.869
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1498.597
|
924.830
|
879.420
|
1199.201
|
1203.547
|
1282.057
|
1690.656
|
992.916
|
1376.399
|
2459.326
|
1995.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.302
|
0.237
|
0.556
|
— | — |
0.411
|
-0.473
|
0.912
|
— | — | — | — | — |
No JSON data available for plots.