SCN Proteipedia

Hg_chrom8_TN10mRNA_16036

Organism: Heterodera glycines Gene Locus: chr8:6836637-6851193 Feature type: polypeptide

Protein Sequence

Length: 1,238

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.005	0.676	0.881	0.39	1.037	1.077	0.933	1.09	0.682	1.19	0.526	0.76	0.942	1.817	1.681	1.073	0.914	1.126	1.305	0.618	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15154	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-Not_Clustered	0.546

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	RNKKPAKASAERMENK	21-41	0.988	—	—	—	—	0.386	—	—	0.108	0.089	0.034	0.236	0.132	0.121	0.255	0.038	0.358	0.843

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003559	2.000	1.000	Hsc_gene_1234.t1	—	—	P39060.5 Collagen alpha-1(XVIII) chain [Homo sapiens]	KAF7639734.1 Endostatin domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0016020	GO:0005575_0.874\|GO:0110165_0.872\|GO:0008150_0.772\|GO:0009987_0.715\|GO:0071944_0.653\|GO:0032501_0.610\|GO:0032502_0.593\|GO:0048856_0.593\|GO:0065007_0.568\|GO:0050789_0.547\|GO:0016020_0.546\|GO:0050794_0.513	IPR000998+296-483+\|IPR003961+70-153_70-157_71-152_72-166_180-262_182-277_183-270_183-271+\|IPR010515+1054-1217+\|IPR013320+510-677+\|IPR013783+63-158_181-275+\|IPR016186+1046-1226+\|IPR016187+1052-1218+\|IPR036116+69-269+\|IPR045463+919-962+\|IPR048287+514-674+\|IPR050991+69-273+	SM00060+70-153_180-262+\|SM00210+514-674+	PF00041+71-152_183-271+Fibronectin_type_III_domain\|PF06482+1054-1217+Collagenase_NC10_and_Endostatin\|PF20010+919-962+Collagen_trimerization_domain	—	PTHR46708+69-273+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-26;157-204;667-1048	3.000	27-156;205-666;1049-1238	1dy2_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.872	135989.950	8.454	21.500	24.960	9.370	45.153	54.847	13.893	11.066	55.331

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	1329.195	1461.116	2281.503	2511.999	1771.252	1710.438	1058.181	1528.931	200.019	1043.929	682.254

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.413	0.645	0.248	-0.536	—	-0.684	-0.266	-0.390	—	—	—	—	—

No JSON data available for plots.

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