SCN Proteipedia

Hg_chrom8_TN10mRNA_16037

Organism: Heterodera glycines Gene Locus: chr8:6853620-6857681 Feature type: polypeptide

Protein Sequence

Length: 910

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.946	1.073	0.759	0.72	0.897	0.93	0.733	1.264	0.904	1.262	0.516	1.487	1.007	1.289	1.48	1.931	0.829	0.849	0.423	0.485	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15155	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-Not_Clustered	0.529

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	—	6-26	0.973	—	—	—	—	0.000	—	—	0.379	0.172	0.017	0.735	0.185	0.194	0.176	0.059	0.281	0.033

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004123	2.000	1.000	Hsc_gene_25393.t1	—	—	Q9NRH2.2 SNF-related serine/threonine-protein kinase [Homo sapiens]	KAF7639733.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.927\|GO:0009987_0.869\|GO:0005575_0.834\|GO:0110165_0.831\|GO:0065007_0.771\|GO:0003674_0.769\|GO:0050789_0.763\|GO:0050794_0.744\|GO:0005622_0.719\|GO:0003824_0.697\|GO:0140096_0.697\|GO:0008152_0.675\|GO:0016740_0.670\|GO:0005488_0.664\|GO:0043170_0.649\|GO:0044237_0.644\|GO:0044238_0.639\|GO:0016772_0.618\|GO:0016773_0.613\|GO:0004672_0.609\|GO:0016301_0.609\|GO:0050896_0.600\|GO:0016020_0.586\|GO:0043226_0.563\|GO:0051716_0.552\|GO:0004674_0.550\|GO:0005737_0.543\|GO:0019538_0.542\|GO:0006793_0.529\|GO:0043229_0.529\|GO:0006796_0.527\|GO:0036211_0.517\|GO:0043412_0.517\|GO:0007154_0.508	IPR000719+34-289+\|IPR008271+155-167+\|IPR011009+33-290+\|IPR017441+40-63+	SM00220+34-289+	PF00069+34-289+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000166+27-375+SNF-related_serine/threonine-protein_kinase\|G3DSA:3.30.200.20:FF:000003+18-114+Non-specific_serine/threonine_protein_kinase	PTHR24346+5-490+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-17;374-654;752-812;891-910	3.000	18-373;655-751;813-890	5yks_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.939	98988.850	8.445	21.500	22.747	8.352	49.560	50.440	13.187	9.560	56.044

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	darkorange	1408.222	1378.717	1642.007	1558.696	2348.599	2147.551	2639.690	2120.092	637.771	494.384	555.836

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	0.560	—	0.308	—	0.457	—	—	—	—	—

No JSON data available for plots.

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