SCN Proteipedia

Hg_chrom8_TN10mRNA_16040

Organism: Heterodera glycines Gene Locus: chr8:6865716-6866534 Feature type: polypeptide

Protein Sequence

Length: 128

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.636	0.908	0.994	1.347	0.911	1.603	0.651	0.781	1.91	1.478	2.012	0.919	0.434	0.751	1.594	0.446	1.025	0.473	0.0	0.689	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15158	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	4G06\|MT0123311#tn8canujg17452t1	Hsc_gene_15525;Hsc_gene_15528	—	—	5-pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RKCYARLPPRATNCRKKKC,RKKKCGHSNDLRIKKKLK.	—	—	—	—	—	—	0.000	—	—	0.647	0.103	0.013	0.549	0.285	0.110	0.060	0.006	0.068	0.143

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001047	4.000	1.000	Hsc_gene_12320.t1	Hsc_gene_12320.t1;Hsc_gene_12320.t2;Hsc_gene_15525.t1;Hsc_gene_15528.t1;Hsc_gene_18450.t1;Hsc_gene_18450.t2;Hsc_gene_20056.t1;Hsc_gene_20056.t2;Hsc_gene_20056.t3;Hsc_gene_21227.t1;Hsc_gene_4135.t1	F25B5.4;ZK1010.1	P49632.2 Ubiquitin-ribosomal protein eL40 fusion protein [Caenorhabditis elegans]	KAI1708272.1 ubiquitin family domain-containing protein [Ditylenchus destructor];KAI1715973.1 ubiquitin family domain-containing protein [Ditylenchus destructor]	No	0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003735\|GO:0005515\|GO:0005840\|GO:0006412	GO:0005575_0.898\|GO:0110165_0.896\|GO:0005622_0.857\|GO:0043226_0.769\|GO:0043229_0.763\|GO:0005737_0.698\|GO:0016020_0.680\|GO:0043227_0.639\|GO:0043231_0.621\|GO:0003674_0.617\|GO:0043228_0.539\|GO:0043232_0.539\|GO:0008150_0.532\|GO:0005829_0.501	IPR000626+1-72_1-76_3-74+\|IPR001975+77-128_78-127+\|IPR019954+27-52+\|IPR019956+11-31_32-52_53-74+\|IPR029071+1-96+\|IPR038587+81-128+\|IPR050158+1-97+	SM00213+1-72+\|SM01377+77-128+	PF00240+3-74+Ubiquitin_family\|PF01020+78-127+Ribosomal_L40e_family	G3DSA:3.10.20.90:FF:000014+1-78+Ubiquitin-60S_ribosomal_L40_fusion\|G3DSA:4.10.1060.50:FF:000001+79-128+ubiquitin-60S_ribosomal_protein_L40	PTHR10666+1-97+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-128	9cai_Cm	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.785	14665.250	10.415	14.000	33.594	5.469	53.125	46.875	22.656	10.938	40.625

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	purple	6372.850	5293.315	6170.833	8489.815	9568.197	7732.336	6236.252	4253.576	4445.845	6642.713	5701.198

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.544	0.568	0.140	-0.292	-0.299	-0.968	0.696	—	—	—	—	—

No JSON data available for plots.

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