Hg_chrom8_TN10mRNA_16041
Organism: Heterodera glycines Gene Locus: chr8:6867304-6868799 Feature type: polypeptideProtein Sequence
Length: 122
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.477 | 0.953 | 1.043 | 0.565 | 1.23 | 0.841 | 0.585 | 0.41 | 2.186 | 0.775 | 1.49 | 1.446 | 0.455 | 1.261 | 1.506 | 1.054 | 1.209 | 1.242 | 0.631 | 0.241 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15159
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.718
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.575
|
0.305
|
0.056
|
0.561
|
0.124
|
0.059
|
0.054
|
0.004
|
0.086
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P60866.1 Small ribosomal subunit protein uS10 [Homo sapiens]
|
KAI1715972.1 ribosomal protein s10p/S20e domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935
|
GO:0005575_0.932|GO:0110165_0.924|GO:0005622_0.811|GO:0043226_0.728|GO:0043229_0.724|GO:0005737_0.721|GO:0005829_0.558|GO:0043228_0.558|GO:0043232_0.554|GO:0003674_0.522
|
IPR001848+8-118_17-116_19-32_54-69_76-90+|IPR005729+19-116+|IPR018268+43-58+|IPR027486+21-115+|IPR036838+4-118_19-116+
|
SM01403+21-115+
|
PF00338+21-115+Ribosomal_protein_S10p/S20e
|
G3DSA:3.30.70.600:FF:000002+5-118+40S_ribosomal_protein_S20
|
PTHR11700+8-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;117-122
|
1.000
|
9-116
|
7oyb_U2
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
13702.880
|
9.988
|
5.500
|
31.148
|
4.098
|
53.279
|
46.721
|
18.033
|
13.115
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
6309.979
|
2398.869
|
3715.445
|
7208.169
|
7214.235
|
5929.735
|
3881.295
|
2293.544
|
6942.714
|
10158.639
|
8780.386
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.402
|
1.450
|
1.065
|
— |
-0.267
|
-0.601
|
-1.477
|
0.903
|
— | — | — | — | — |
No JSON data available for plots.