SCN Proteipedia

Hg_chrom8_TN10mRNA_16042

Organism: Heterodera glycines Gene Locus: chr8:6868892-6870810 Feature type: polypeptide

Protein Sequence

Length: 324

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.328	1.436	0.561	0.426	0.669	1.266	1.286	1.235	0.617	0.709	0.421	1.997	0.943	1.068	1.134	2.028	1.113	0.374	0.475	0.908	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15160	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.981

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRAKWRKRERQRK	—	—	69-95	0.915	—	—	0.000	—	—	0.815	0.171	0.010	0.269	0.040	0.066	0.060	0.015	0.062	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001348	2.000	3.000	Hsc_gene_21873.t1;Hsc_gene_24945.t1;Hsc_gene_9168.t1	—	—	G5EC89.1 Homeobox protein ceh-17 [Caenorhabditis elegans]	CDJ96658.1 Homeobox domain containing protein [Haemonchus contortus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.892\|GO:0009987_0.835\|GO:0003674_0.759\|GO:0003676_0.759\|GO:0005488_0.759\|GO:0097159_0.759\|GO:0050789_0.751\|GO:0065007_0.751\|GO:0050794_0.747\|GO:0032502_0.734\|GO:0048856_0.733\|GO:0032501_0.727\|GO:0003677_0.715\|GO:0005575_0.702\|GO:0043565_0.690\|GO:0003690_0.677\|GO:1990837_0.676\|GO:0006139_0.675\|GO:0008152_0.675\|GO:0009058_0.675\|GO:0009059_0.675\|GO:0016070_0.675\|GO:0032774_0.675\|GO:0034654_0.675\|GO:0043170_0.675\|GO:0044237_0.675\|GO:0044238_0.675\|GO:0044249_0.675\|GO:0090304_0.675\|GO:0141187_0.675\|GO:0007275_0.673\|GO:0010467_0.671\|GO:0019222_0.667\|GO:0031323_0.667\|GO:0019219_0.662\|GO:0051252_0.662\|GO:0060255_0.662\|GO:0080090_0.662\|GO:0110165_0.662\|GO:0009889_0.657\|GO:0031326_0.657\|GO:0006351_0.656\|GO:0006355_0.656\|GO:0010468_0.656\|GO:0010556_0.656\|GO:2001141_0.656\|GO:0005622_0.641\|GO:0043226_0.641\|GO:0043229_0.641\|GO:0048731_0.621\|GO:0016020_0.563\|GO:0000976_0.560\|GO:0001067_0.560\|GO:0006366_0.542\|GO:0048869_0.539\|GO:0006357_0.537\|GO:0030154_0.531\|GO:0005634_0.529\|GO:0043227_0.529\|GO:0043231_0.529\|GO:0048518_0.525\|GO:0048522_0.520\|GO:0007399_0.513\|GO:0140110_0.505	IPR001356+227-287_229-291_230-286_230-288+\|IPR009057+212-289+\|IPR017970+262-285+\|IPR050649+220-313+	SM00389+229-291+	PF00046+230-286+Homeodomain	G3DSA:1.10.10.60:FF:000291+225-290+ALX_homeobox_protein_1	PTHR24329+220-313+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-10;120-165;211-324	2.000	11-119;166-210	8p7g_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.979	34060.390	8.758	8.000	17.901	9.568	50.000	50.000	10.802	7.099	61.728

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	102.000	221.985	133.051	82.640	46.603	45.532	132.812	115.207	24.170	136.436	88.322

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.971	-1.563	-0.576	-0.856	—	1.559	1.236	0.349	—	—	—	—	—

No JSON data available for plots.

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