Hg_chrom8_TN10mRNA_16045
Organism: Heterodera glycines Gene Locus: chr8:6877752-6879351 Feature type: polypeptideProtein Sequence
Length: 281
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 0.579 | 1.1 | 0.736 | 0.89 | 0.73 | 0.932 | 1.423 | 1.186 | 0.962 | 1.186 | 2.512 | 1.186 | 0.958 | 0.726 | 0.864 | 1.05 | 1.132 | 0.274 | 1.465 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15163
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
26-59
|
0.983
|
— | — |
0.000
|
— | — |
0.463
|
0.409
|
0.031
|
0.569
|
0.116
|
0.130
|
0.140
|
0.056
|
0.042
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004775
|
2.000
|
1.000
|
Hsc_gene_6476.t1
|
— | — |
Q9XUV0.1 Proteasome subunit pbs-5 [Caenorhabditis elegans]
|
KAI1701947.1 proteasome subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004298|GO:0005839|GO:0051603
|
GO:0005575_0.836|GO:0110165_0.828|GO:0005622_0.751|GO:0008150_0.702|GO:0016020_0.657|GO:0043226_0.623|GO:0043229_0.605|GO:0043227_0.590|GO:0043231_0.569|GO:0032991_0.568|GO:0003674_0.557|GO:1902494_0.532|GO:0140535_0.524|GO:1905368_0.520|GO:1905369_0.520|GO:0000502_0.514|GO:0005737_0.506
|
IPR000243+77-92_199-210_210-221_235-246+|IPR001353+78-249+|IPR023333+58-253_62-249+|IPR029055+40-275_54-269+
|
— |
PF00227+78-249+Proteasome_subunit
|
— |
PTHR32194+58-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-281
|
6tcz_l
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
31164.890
|
7.396
|
4.000
|
25.623
|
12.456
|
43.416
|
56.584
|
14.235
|
11.388
|
51.246
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
4397.874
|
4233.913
|
3345.397
|
4865.551
|
5207.393
|
4612.472
|
3301.551
|
3950.646
|
3466.181
|
5572.216
|
4669.630
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.569
|
0.064
|
0.649
|
— | — |
-0.472
|
-0.329
|
— | — | — | — | — | — |
No JSON data available for plots.