Hg_chrom8_TN10mRNA_16047
Organism: Heterodera glycines Gene Locus: chr8:6882639-6885021 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.523 | 0.972 | 1.228 | 0.998 | 1.125 | 0.742 | 0.766 | 1.447 | 1.643 | 1.26 | 1.169 | 0.567 | 1.34 | 0.742 | 1.706 | 0.781 | 0.527 | 0.974 | 0.989 | 1.135 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15165
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular|cell_membrane
|
— |
KRRK,RRLYVSGVFKKRAKQ
|
2-30
|
0.977
|
— | — | — | — |
0.000
|
— | — |
0.241
|
0.198
|
0.035
|
0.535
|
0.147
|
0.411
|
0.213
|
0.018
|
0.626
|
0.636
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004149
|
2.000
|
1.000
|
Hsc_gene_25175.t1
|
— | — |
P36573.1 32 kDa beta-galactoside-binding lectin [Caenorhabditis elegans]
|
KAI1708297.1 galactoside-binding lectin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0005575_0.735|GO:0110165_0.733|GO:0008150_0.681|GO:0016020_0.593|GO:0009987_0.569|GO:0003674_0.540
|
IPR001079+31-172_32-170_33-171_34-172_38-171_178-311_179-309_180-311_184-310+|IPR013320+30-173_176-311+|IPR044156+29-111+
|
SM00276+31-172_178-311+|SM00908+38-171_184-310+
|
PF00337+33-171_179-309+Galactoside-binding_lectin
|
G3DSA:2.60.120.200:FF:000261+19-176+Galectin
|
PTHR11346+29-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
36046.450
|
8.843
|
12.500
|
32.476
|
12.862
|
48.232
|
51.768
|
18.971
|
13.505
|
43.730
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1005.136
|
1726.995
|
973.004
|
500.462
|
744.006
|
1880.286
|
1111.787
|
2594.415
|
266.839
|
623.231
|
470.491
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.057
|
-1.924
|
-0.851
|
0.540
|
1.352
|
-0.748
|
0.356
|
-1.079
|
— | — | — | — | — |
No JSON data available for plots.