SCN Proteipedia

Hg_chrom8_TN10mRNA_16048

Organism: Heterodera glycines Gene Locus: chr8:6886607-6888338 Feature type: polypeptide

Protein Sequence

Length: 257

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.271	1.267	0.849	0.403	1.556	1.097	0.602	0.584	1.297	1.104	0.884	0.916	1.405	0.973	1.747	1.556	0.702	0.884	1.796	0.916	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15166	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	peroxisomal_targeting_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.563	0.533	0.194	0.471	0.064	0.253	0.143	0.471	0.063	0.210

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	Q20939.2 Putative pyridoxamine 5'-phosphate oxidase [Caenorhabditis elegans]	KAI1705122.1 pyridoxamine 5'-phosphate oxidase domain-containing protein [Ditylenchus destructor]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004733\|GO:0008615\|GO:0010181\|GO:0016638	GO:0008150_0.929\|GO:0009987_0.807\|GO:0008152_0.783\|GO:0003674_0.762\|GO:0044237_0.702\|GO:0009058_0.698\|GO:0044249_0.686\|GO:0044281_0.685\|GO:1901615_0.675\|GO:0006766_0.670\|GO:0006767_0.670\|GO:0042816_0.670\|GO:0072524_0.670\|GO:0005575_0.665\|GO:0110165_0.659\|GO:0003824_0.646\|GO:0006793_0.628\|GO:0006796_0.628\|GO:0019637_0.620\|GO:0090407_0.617\|GO:0044283_0.616\|GO:1901617_0.614\|GO:0005622_0.611\|GO:0006081_0.611\|GO:0009110_0.611\|GO:0042364_0.611\|GO:0042819_0.611\|GO:0042822_0.611\|GO:0042823_0.611\|GO:0046184_0.611\|GO:0072525_0.611\|GO:0016491_0.600\|GO:0004733_0.546\|GO:0016638_0.546\|GO:0016641_0.546\|GO:0005737_0.534	IPR000659+32-257_36-257_61-257+\|IPR011576+82-158+\|IPR012349+52-257+\|IPR019576+215-257+\|IPR019740+225-238+	—	PF01243+82-158+Pyridoxamine_5'-phosphate_oxidase\|PF10590+215-257+Pyridoxine_5'-phosphate_oxidase_C-terminal_dimerisation_region	G3DSA:2.30.110.10:FF:000020+55-255+PNPO_isoform_11	PTHR10851+36-257+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-28;256-257	1.000	29-255	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.835	29986.810	7.763	2.500	29.572	11.673	54.475	45.525	15.564	14.008	44.747

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	blue	2176.558	566.298	406.470	381.101	482.446	664.376	948.965	891.267	788.350	7303.331	4511.197

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.710	-0.708	—	0.308	0.476	0.525	0.316	—	-3.294	—	-3.469	—	—

No JSON data available for plots.

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