Hg_chrom8_TN10mRNA_16049
Organism: Heterodera glycines Gene Locus: chr8:6889373-6891242 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 0.754 | 1.134 | 0.172 | 1.746 | 1.471 | 0.267 | 0.374 | 1.108 | 0.944 | 1.927 | 1.027 | 0.901 | 1.103 | 1.425 | 1.069 | 1.022 | 1.058 | 0.575 | 0.513 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15167
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRS,KRLNELKELQNTAKKVDR,KKVDREKEQYERDKRAQK,RDKRAQKIREEQMKERAERTKREREERAKRVQKNN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.704
|
0.226
|
0.003
|
0.528
|
0.045
|
0.028
|
0.020
|
0.008
|
0.138
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012224
|
1.000
|
1.000
|
Hsc_gene_3644.t1
|
— | — | — |
KAI1723947.1 iron-binding zinc finger CDGSH type domain-containing protein [Ditylenchus destructor]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.960|GO:0110165_0.960|GO:0005622_0.942|GO:0043226_0.925|GO:0043229_0.921|GO:0043228_0.835|GO:0043232_0.835|GO:0008150_0.723|GO:0016020_0.710|GO:0009987_0.692|GO:0043227_0.662|GO:0003674_0.632|GO:0005488_0.632|GO:0043231_0.629|GO:0071840_0.600|GO:0032991_0.599|GO:0005694_0.591|GO:0005515_0.590|GO:0016043_0.590|GO:0005634_0.576|GO:0006996_0.543
|
IPR005635+304-358+
|
— |
PF03941+304-358+Inner_centromere_protein,_ARK_binding_region
|
— |
PTHR13142+65-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
41-330;373-401
|
2.000
|
1-40;331-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
46395.930
|
9.937
|
13.500
|
37.157
|
6.484
|
59.850
|
40.150
|
20.449
|
16.708
|
43.890
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
1687.670
|
2830.327
|
1101.968
|
1468.159
|
1678.531
|
1427.940
|
1190.618
|
1954.667
|
2336.342
|
1261.722
|
1722.274
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.591
|
-1.084
|
0.523
|
0.161
|
-0.218
|
-0.252
|
0.348
|
-0.572
|
— | — | — | — | — |
No JSON data available for plots.