Hg_chrom8_TN10mRNA_16050
Organism: Heterodera glycines Gene Locus: chr8:6893680-6898203 Feature type: polypeptideProtein Sequence
Length: 570
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 0.979 | 1.053 | 1.512 | 1.199 | 0.9 | 0.418 | 1.228 | 0.975 | 1.328 | 0.904 | 1.135 | 1.462 | 1.113 | 1.898 | 1.378 | 0.575 | 0.665 | 0.81 | 0.516 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15168
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.585
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRR,RRAKNLRKFRKLRVK
|
8-29
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.248
|
0.154
|
0.008
|
0.660
|
0.270
|
0.353
|
0.215
|
0.015
|
0.298
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002512
|
2.000
|
2.000
|
Hsc_gene_3645.t1;Hsc_gene_3645.t2
|
Hsc_gene_3645.t1;Hsc_gene_3645.t2
|
— | — |
KAF7639713.1 DUF4206 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.959|GO:0009987_0.912|GO:0071840_0.787|GO:0016043_0.778|GO:0065007_0.696|GO:0050789_0.685|GO:0050794_0.677|GO:0005575_0.671|GO:0110165_0.671|GO:0008152_0.610|GO:0051179_0.610|GO:0005622_0.602|GO:0044237_0.592|GO:0016020_0.556|GO:0043226_0.545|GO:0043229_0.519|GO:0009056_0.513
|
IPR025258+332-553_333-550+|IPR052428+288-553+
|
SM01175+332-553+
|
PF13901+333-550+Rubicon_Homology_Domain
|
— |
PTHR45971+288-553+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;138-260
|
2.000
|
7-137;261-570
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
65441.810
|
8.457
|
20.000
|
30.702
|
10.526
|
51.579
|
48.421
|
17.719
|
12.982
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
865.113
|
1539.938
|
863.989
|
745.535
|
917.095
|
765.322
|
1202.951
|
717.533
|
695.639
|
731.005
|
715.848
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.065
|
-1.184
|
— |
0.268
|
-0.247
|
0.664
|
— |
0.888
|
— | — | — | — | — |
No JSON data available for plots.