Hg_chrom8_TN10mRNA_16051
Organism: Heterodera glycines Gene Locus: chr8:6893680-6898203 Feature type: polypeptideProtein Sequence
Length: 568
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 0.983 | 1.056 | 1.518 | 1.203 | 0.903 | 0.419 | 1.232 | 0.939 | 1.309 | 0.907 | 1.243 | 1.467 | 1.117 | 1.868 | 1.383 | 0.577 | 0.667 | 0.813 | 0.518 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15168
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.585
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRR,RRAKNLRKFRKLRVK
|
8-29
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.250
|
0.155
|
0.008
|
0.658
|
0.275
|
0.356
|
0.217
|
0.014
|
0.300
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002512
|
2.000
|
2.000
|
Hsc_gene_3645.t1;Hsc_gene_3645.t2
|
Hsc_gene_3645.t1;Hsc_gene_3645.t2
|
— | — |
KAF7639713.1 DUF4206 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.958|GO:0009987_0.909|GO:0071840_0.786|GO:0016043_0.775|GO:0065007_0.698|GO:0050789_0.686|GO:0050794_0.678|GO:0005575_0.672|GO:0110165_0.672|GO:0008152_0.614|GO:0051179_0.605|GO:0005622_0.601|GO:0044237_0.596|GO:0016020_0.552|GO:0043226_0.545|GO:0009056_0.517|GO:0043229_0.517|GO:0044248_0.503|GO:0006914_0.501|GO:0061919_0.501
|
IPR025258+332-551_333-548+|IPR052428+287-551+
|
SM01175+332-551+
|
PF13901+333-548+Rubicon_Homology_Domain
|
— |
PTHR45971+287-551+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;138-260
|
2.000
|
7-137;261-568
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
65190.500
|
8.393
|
19.000
|
30.634
|
10.563
|
51.585
|
48.415
|
17.606
|
13.028
|
47.535
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
865.113
|
1539.938
|
863.989
|
745.535
|
917.095
|
765.322
|
1202.951
|
717.533
|
695.639
|
731.005
|
715.848
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.065
|
-1.184
|
— |
0.268
|
-0.247
|
0.664
|
— |
0.888
|
— | — | — | — | — |
No JSON data available for plots.