SCN Proteipedia

Hg_chrom8_TN10mRNA_16052

Organism: Heterodera glycines Gene Locus: chr8:6898379-6899699 Feature type: polypeptide

Protein Sequence

Length: 221

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.052	0.421	0.411	1.248	2.036	1.16	1.508	2.036	0.603	0.489	1.44	1.863	0.754	0.957	1.293	0.776	0.297	0.823	0.696	0.932	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15169	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.930

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.846	0.136	0.013	0.627	0.076	0.032	0.071	0.001	0.023	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012225	1.000	1.000	Hsc_gene_3646.t1	Hsc_gene_3646.t1	—	P91599.1 Protein lin-28 [Caenorhabditis remanei]	KAI6207542.1 Protein lin-28-like protein isoform X2 [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0008270	GO:0008150_0.895\|GO:0005575_0.851\|GO:0110165_0.803\|GO:0003674_0.787\|GO:0009987_0.775\|GO:0005488_0.751\|GO:0005622_0.742\|GO:0065007_0.737\|GO:0050789_0.720\|GO:0050794_0.706\|GO:0008152_0.688\|GO:0044237_0.679\|GO:0044238_0.664\|GO:0043170_0.649\|GO:0019222_0.648\|GO:0097159_0.648\|GO:0031323_0.643\|GO:0009058_0.641\|GO:0009059_0.640\|GO:0010467_0.640\|GO:0044249_0.640\|GO:0003676_0.632\|GO:0005737_0.631\|GO:0006139_0.629\|GO:0060255_0.614\|GO:0080090_0.609\|GO:0090304_0.608\|GO:0016070_0.605\|GO:0009889_0.598\|GO:0031326_0.598\|GO:0010468_0.593\|GO:0010556_0.593\|GO:0003723_0.578\|GO:0048519_0.562\|GO:0048523_0.546\|GO:0009892_0.519\|GO:0043226_0.519\|GO:0010605_0.517\|GO:0048518_0.516\|GO:0031324_0.515\|GO:0034654_0.513\|GO:0032774_0.510\|GO:0141187_0.510\|GO:0009890_0.506\|GO:0010558_0.506\|GO:0031327_0.506	IPR001878+151-168_176-192+\|IPR002059+58-128_61-76_61-126_61-128_102-120+\|IPR011129+60-129+\|IPR012340+55-128_55-138+\|IPR036875+145-194+\|IPR051373+38-210+	SM00343+151-168_176-192+\|SM00357+60-129+	PF00098+176-192+Zinc_knuckle\|PF00313+61-128+'Cold-shock'_DNA-binding_domain	—	PTHR46109+38-210+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-47;190-221	1.000	48-189	5udz_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.841	24381.520	8.107	7.500	34.389	10.860	47.964	52.036	19.910	14.480	47.059

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	5521.466	55127.647	5741.416	585.876	120.976	203.004	625.537	465.733	510.455	197.250	331.481

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-3.494	-6.692	-3.183	-2.308	0.762	1.632	1.088	0.569	—	—	—	—	7.767

No JSON data available for plots.

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