Hg_chrom8_TN10mRNA_16053
Organism: Heterodera glycines Gene Locus: chr8:6900563-6903396 Feature type: polypeptideProtein Sequence
Length: 515
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.174 | 0.768 | 1.342 | 0.603 | 1.715 | 1.344 | 0.67 | 1.165 | 1.338 | 1.338 | 0.883 | 0.8 | 1.025 | 0.597 | 1.387 | 0.555 | 0.7 | 0.853 | 0.896 | 0.685 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15170
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKQIAKAENTSRSERKERE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.398
|
0.146
|
0.007
|
0.700
|
0.127
|
0.427
|
0.395
|
0.058
|
0.194
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012226
|
1.000
|
1.000
|
Hsc_gene_3647.t1
|
Hsc_gene_3647.t1
|
— |
Q9U2Y2.1 CDK5RAP3-like protein [Caenorhabditis elegans]
|
KAH7697804.1 HSF-27 protein [Aphelenchus avenae];KAH7721948.1 HSF-27 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.823|GO:0009987_0.771|GO:0005575_0.716|GO:0110165_0.706|GO:0003674_0.703|GO:0065007_0.676|GO:0008152_0.675|GO:0050789_0.662|GO:0044238_0.657|GO:0044237_0.650|GO:0005622_0.644|GO:0050794_0.640|GO:0043170_0.628|GO:0005488_0.622|GO:0019538_0.614|GO:0019222_0.595|GO:0005515_0.594|GO:0031323_0.591|GO:0005737_0.581|GO:0060255_0.526|GO:0080090_0.522|GO:0043412_0.516|GO:0036211_0.511
|
IPR008491+2-506_328-512+
|
— |
PF05600+2-506+CDK5_regulatory_subunit-associated_protein_3
|
— |
PTHR14894+328-512+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-515
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
58333.880
|
4.759
|
-20.000
|
32.621
|
9.515
|
49.320
|
50.680
|
14.951
|
17.670
|
45.049
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2706.814
|
12035.699
|
3284.238
|
1657.290
|
1670.124
|
1494.789
|
2092.386
|
1387.472
|
2287.996
|
1268.066
|
1705.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.105
|
-2.998
|
-0.876
|
— |
-0.145
|
0.497
|
-0.213
|
0.737
|
— | — | — | — | — |
No JSON data available for plots.